get rid of affy deps

waldronlab · Oct 31, 2023 · c16d804 · c16d804
1 parent 4b751ff
commit c16d804
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Showing 4 changed files with 6 additions and 4 deletions.
diff --git a/.Rbuildignore b/.Rbuildignore
@@ -1,3 +1,6 @@
 ^README\.md$
 ^external_data_store\.txt$
 ^\.gitattributes$
+.github
+curatedOvarianData.Rproj
+
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,8 +1,8 @@
 Package: curatedOvarianData
 Type: Package
 Title: Clinically Annotated Data for the Ovarian Cancer Transcriptome
-Version: 1.40.0
-Date: 2023-06-15
+Version: 1.40.1
+Date: 2023-10-31
 Author: Benjamin F. Ganzfried, Markus Riester, Steve Skates, Victoria Wang, Thomas Risch, Benjamin Haibe-Kains, Svitlana Tyekucheva, Jie Ding, Ina Jazic, Michael Birrer, Giovanni Parmigiani, Curtis Huttenhower, Levi Waldron
 Maintainer: Levi Waldron <[email protected]>
 Description: The curatedOvarianData package provides data for gene expression analysis in patients with ovarian cancer.

diff --git a/inst/unitTests/test_checkCurated.R b/inst/unitTests/test_checkCurated.R
@@ -1,5 +1,5 @@
 test_checkCurated <- function(){
-    library(affy)
+    library(curatedOvarianData)
     ##the template to use
     ##template.file <- "../extdata/template_ov.csv"
     template.file <- system.file("extdata/template_ov.csv", package = "curatedOvarianData")

diff --git a/vignettes/curatedOvarianData_vignette.rnw b/vignettes/curatedOvarianData_vignette.rnw
@@ -431,7 +431,6 @@ a simple way to do it.  For one dataset:
 
 <<simplygetdata, eval=FALSE>>=
 library(curatedOvarianData)
-library(affy)
 data(GSE30161_eset)
 write.csv(exprs(GSE30161_eset), file="GSE30161_eset_exprs.csv")
 write.csv(pData(GSE30161_eset), file="GSE30161_eset_clindata.csv")