add 1e-06 to branches of tips with 0 length, but don't add genera as …

…tips wtith zero length
waldronlab · Nov 27, 2023 · 5c1bf8e · 5c1bf8e
1 parent 127d89f
commit 5c1bf8e
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diff --git a/R/trees.R b/R/trees.R
@@ -235,11 +235,11 @@ ltp3 <- function() {
         purrr::modify(as.character) |>
         as.data.frame()
 
-    genus_tips <- grep('g__', tip_data$tip_label, value = TRUE)
+    # genus_tips <- grep('g__', tip_data$tip_label, value = TRUE)
 
     list(
-        tree = tree, tip_data = tip_data, node_data = node_data,
-        genus_tips = genus_tips
+        tree = tree, tip_data = tip_data, node_data = node_data
+        # genus_tips = genus_tips
     )
 }
 

diff --git a/inst/extdata/LTP_all_08_2023.newick b/inst/extdata/LTP_all_08_2023.newick