Repair OLIAPI #8917
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Checks | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| concurrency: | |
| # NOTE: the value of `group` should be chosen carefully, | |
| # otherwise we might end up over- or under-canceling workflow runs | |
| # github.head_ref is only defined for pull request events | |
| # so, if it's not present (i.e. event was triggered by push) | |
| # we use github.ref instead | |
| group: ${{ github.workflow }}-${{ github.head_ref || github.ref }} | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| # important to make sure that all commands on Windows are run using Bash | |
| # -l: login shell, needed when using Conda | |
| shell: bash -l {0} | |
| env: | |
| # --color=yes needed for colorized output to be shown in GHA logs | |
| # --pyargs watertap is needed to be able to define CLI options in watertap/conftest.py | |
| PYTEST_ADDOPTS: "--color=yes" | |
| PIP_PROGRESS_BAR: "off" | |
| WATERTAP_KERNEL_NAME: watertap-dev | |
| jobs: | |
| code-formatting: | |
| name: Check code is formatted (Black) | |
| # OS and/or Python version don't make a difference, so we choose ubuntu and 3.8 as defaults | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.11' | |
| - name: Install Black | |
| # unlike the other jobs, we don't need to install WaterTAP and/or all the dev dependencies, | |
| # but we still want to specify the Black version to use in requirements-dev.txt for local development | |
| # so we extract the relevant line and pass it to a simple `pip install` | |
| run: | | |
| black_requirement="$(grep '^black==' requirements-dev.txt)" | |
| pip --no-cache-dir install "$black_requirement" | |
| - name: Run Black to verify that the committed code is formatted | |
| run: | | |
| black --check . | |
| pylint: | |
| name: Code linting (pylint) | |
| runs-on: ubuntu-latest | |
| needs: [code-formatting] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.11' | |
| - name: Install dev dependencies | |
| run: | | |
| pip install -r requirements-dev.txt | |
| pip list | |
| - name: Run pylint | |
| run: | | |
| pylint watertap | |
| tests: | |
| name: Tests (py${{ matrix.python-version }}/${{ matrix.os }}) | |
| runs-on: ${{ matrix.os-version }} | |
| needs: [code-formatting] | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: | |
| - '3.9' | |
| - '3.10' | |
| - '3.11' | |
| os: | |
| - linux | |
| - win64 | |
| # - macos | |
| include: | |
| - os: linux | |
| os-version: ubuntu-20.04 | |
| - os: win64 | |
| os-version: windows-2019 | |
| # - os: macos | |
| # os-version: macos-10.15 | |
| - python-version: '3.10' | |
| # limit uploading coverage report for a single Python version in the matrix | |
| coverage: true | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: watertap-dev | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| echo '::group::Output of "conda install" commands' | |
| conda install --quiet --yes pip setuptools wheel pandoc | |
| echo '::endgroup::' | |
| echo '::group::Output of "pip install" commands' | |
| pip install -r requirements-dev.txt | |
| echo '::endgroup::' | |
| echo '::group::Output of "conda install -c conda-forge cyipopt" command' | |
| conda install -c conda-forge cyipopt | |
| echo '::endgroup::' | |
| echo '::group::Display installed packages' | |
| conda list | |
| pip list | |
| pip show idaes-pse | |
| echo '::endgroup::' | |
| echo '::group::Output of "idaes get-extensions" command' | |
| idaes get-extensions --extra petsc --verbose | |
| echo '::endgroup::' | |
| - name: Add coverage report pytest options | |
| if: matrix.coverage | |
| run: | |
| | | |
| echo PYTEST_ADDOPTS="$PYTEST_ADDOPTS --cov-report=xml" >> $GITHUB_ENV | |
| - name: Test with pytest | |
| run: | | |
| pytest --pyargs watertap | |
| - name: Upload coverage report as job artifact | |
| if: matrix.coverage | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-report-${{ matrix.os }} | |
| path: coverage.xml | |
| if-no-files-found: error | |
| - name: Test documentation code | |
| run: | | |
| make -C docs doctest -d | |
| # TODO: this should be moved to a dedicated job/workflow | |
| # until then, we can leave this here as a reminder | |
| - name: Test documentation links | |
| if: 'false' | |
| run: | | |
| make -C docs linkcheck -d | |
| upload-coverage: | |
| name: Upload coverage report (Codecov) | |
| needs: [tests] | |
| runs-on: ubuntu-latest | |
| steps: | |
| # the checkout step is needed to have access to codecov.yml | |
| - uses: actions/checkout@v4 | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| pattern: coverage-report-* | |
| - name: Upload coverage report to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| fail_ci_if_error: true | |
| verbose: true | |
| # NOTE: secrets are not available for pull_request workflows | |
| # However, as of 2024-02-10, Codecov is still allowing tokenless upload from PRs | |
| # but does require token for other workflows e.g. merge to `main` | |
| # see https://github.com/codecov/codecov-action/issues/1274#issuecomment-1934437359 | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| # downgrading after v0.7.0 broke tokenless upload | |
| # see codecov/codecov-action#1487 | |
| version: v0.6.0 | |
| user-mode-pytest: | |
| name: pytest (user mode) (py${{ matrix.python-version }}/${{ matrix.os }}) | |
| runs-on: ${{ matrix.os-version }} | |
| needs: [code-formatting] | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: | |
| - '3.9' | |
| - '3.11' | |
| os: | |
| - linux | |
| - win64 | |
| include: | |
| - os: linux | |
| os-version: ubuntu-20.04 | |
| - os: win64 | |
| os-version: windows-2019 | |
| steps: | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: watertap | |
| python-version: ${{ matrix.python-version }} | |
| - name: Define install URL (default) | |
| env: | |
| _repo_full_name: watertap-org/watertap | |
| _ref_to_install: main | |
| run: | | |
| echo "_install_url=https://github.com/${_repo_full_name}/archive/${_ref_to_install}.zip" >> $GITHUB_ENV | |
| - name: Define install URL (for PRs) | |
| if: github.event.pull_request | |
| env: | |
| _repo_full_name: ${{ github.event.pull_request.head.repo.full_name }} | |
| _ref_to_install: ${{ github.event.pull_request.head.sha }} | |
| run: | |
| echo "_install_url=https://github.com/${_repo_full_name}/archive/${_ref_to_install}.zip" >> $GITHUB_ENV | |
| - name: Install watertap and testing dependencies | |
| run: | | |
| echo '::group::Output of "pip install" commands' | |
| pip install "watertap @ ${_install_url}" pytest | |
| echo '::endgroup::' | |
| echo '::group::Display installed packages' | |
| conda list | |
| pip list | |
| pip show idaes-pse | |
| echo '::endgroup::' | |
| echo '::group::Output of "idaes get-extensions" command' | |
| idaes get-extensions --extra petsc --verbose | |
| echo '::endgroup::' | |
| - name: Run pytest | |
| run: | | |
| pytest --pyargs watertap | |
| notebooks: | |
| name: Test notebooks (py${{ matrix.python-version }}/${{ matrix.os }}) | |
| runs-on: ${{ matrix.os-version }} | |
| needs: [code-formatting] | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: | |
| - '3.9' | |
| - '3.11' | |
| os: | |
| - linux | |
| - win64 | |
| include: | |
| - os: linux | |
| os-version: ubuntu-20.04 | |
| - os: win64 | |
| os-version: windows-2019 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: watertap-dev | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| echo '::group::Output of "conda install" commands' | |
| conda install --quiet --yes pip setuptools wheel pandoc | |
| echo '::endgroup::' | |
| echo '::group::Output of "pip install" commands' | |
| pip install -r requirements-dev.txt | |
| echo '::endgroup::' | |
| echo '::group::Display installed packages' | |
| conda list | |
| pip list | |
| pip show idaes-pse | |
| echo '::endgroup::' | |
| echo '::group::Output of "idaes get-extensions" command' | |
| idaes get-extensions --extra petsc --verbose | |
| echo '::endgroup::' | |
| - name: Install Jupyter kernel | |
| run: | | |
| jupyter kernelspec list | |
| python -m ipykernel install --user --name "${{ env.WATERTAP_KERNEL_NAME }}" | |
| jupyter kernelspec list | |
| - name: Run pytest with nbmake | |
| run: | | |
| pytest --nbmake --nbmake-kernel="${{ env.WATERTAP_KERNEL_NAME }}" **/*.ipynb | |
| macos: | |
| name: macOS setup (EXPERIMENTAL) | |
| runs-on: macos-13 | |
| needs: [code-formatting] | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: | |
| - '3.9' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: watertap | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install WaterTAP (dev) without idaes get-extensions | |
| run: | | |
| echo '::group::Output of "conda install" commands' | |
| conda install --quiet --yes pip=21.1 wheel setuptools pandoc | |
| echo '::endgroup::' | |
| echo '::group::Output of "pip install" commands' | |
| pip install -r requirements-dev.txt | |
| echo '::endgroup::' | |
| echo '::group::Display installed packages' | |
| conda list | |
| pip list | |
| pip show pyomo idaes-pse | |
| echo '::endgroup::' | |
| - name: Install Ipopt from conda-forge | |
| run: | |
| conda install --quiet --yes -c conda-forge ipopt=3.14.11 | |
| - name: Build Pyomo extensions | |
| run: | | |
| conda install --quiet --yes cmake | |
| # some failures are expected, but this should succeed as long as pynumero is built correctly | |
| pyomo build-extensions || python -c "from pyomo.contrib.pynumero.asl import AmplInterface; exit(0) if AmplInterface.available() else exit(1)" | |
| - name: Run pytest | |
| run: | | |
| pytest --pyargs watertap -k 'not (nf_dspmde.nf_ui or nf_dspmde.nf_with_bypass_ui or mvc.mvc_single_stage_ui or full_water_resource_recovery_facility.BSM2_P_extension_ui )' |