0.5.1

What's Changed

• Fix 3D tiled flow inference
• Fix explicit augmentation parameter passing to the fit method.
• Add spots fitting option to CLI to retrieve spot size
• Improve probability threshold optimization
• Tweak training scripts
• Move flow normalization to the forward pass

Full Changelog: 0.5.0...0.5.1

0.5.0

What's Changed

• Extend NMS behaviour
• Changes to CLI arguments for readability
• Added option to train from the CLI
• Documentation improvement

Full Changelog: 0.4.5...0.5.0

0.4.5

• Downgrade CI actions (#18)

Full Changelog: 0.4.4...0.4.5

0.4.4

• Added support for Python 3.12 by dropping distutils from wheel building.
• Bump docs version automatically when building the docs
• Fix API display in docs

Full Changelog: 0.4.3...0.4.4

0.4.3

• Changed default logging behaviour (see #17)
• Added zarr-friendly, multi-GPU prediction script
• Remove out-of-date scripts

0.4.2

• Allow storing/loading pretrained models and datasets either via the env var SPOTIFLOW_CACHE_DIR or directly through the cache_dir argument (see #15).
• Bump CI actions to newer versions

Bugfix: setuptools building

• Fix build failing due to setuptools error
• Assess PyTorch warning (#14)

Native 3D spot prediction

• Added 3D variant of UNet
• Added 3D SpotsDataset handler
• Added pre-trained 3D models
• Trilinear interpolation to retrieve intensity

0.3.3

What's Changed

• Extend CLI parameters and Add Github Actions for Docker . by @migueLib in #11
• CLI handling of hidden files (#12)

New Contributors

• @migueLib made their first contribution in #11

Full Changelog: 0.3.2...0.3.3

0.3.2

Preparing upload to conda-forge by removing an unnecessary breaking dependency