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DeepLabCut (www.deeplabcut.org) was initially developed by | ||
Alexander & Mackenzie Mathis in collaboration with Matthias Bethge. | ||
Alexander & Mackenzie Mathis in collaboration with Matthias Bethge. | ||
It is actively developed by Alexander & Mackenzie Mathis (steering council and owners). | ||
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DeepLabCut is an open-source tool and has benefited from suggestions and edits by many | ||
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@@ -82,23 +82,23 @@ T Nath, https://github.com/meet10may | |
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Preprint: | ||
Multi-animal pose estimation and tracking with DeepLabCut | ||
J Lauer, M Zhou, S Ye, W Menegas, S Schneider, T Nath, MM Rahman, V Di Santo, | ||
J Lauer, M Zhou, S Ye, W Menegas, S Schneider, T Nath, MM Rahman, V Di Santo, | ||
D Soberanes, G Feng, VN Murthy, G Lauder, C Dulac, M Mathis, A Mathis (2021). | ||
https://www.biorxiv.org/content/10.1101/2021.04.30.442096v1 | ||
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Publication: | ||
Publication: | ||
Multi-animal pose estimation, identification and tracking with DeepLabCut | ||
Lauer, J., Zhou, M., Ye, S., Menegas, W., Schneider, S., Nath, T., Rahman, M.M., | ||
Di Santo, V., Soberanes, D., Feng, G., Murthy, V.N., Lauder, G.V., Dulac, C., | ||
Mathis, M.W., & Mathis, A. (2022). | ||
Lauer, J., Zhou, M., Ye, S., Menegas, W., Schneider, S., Nath, T., Rahman, M.M., | ||
Di Santo, V., Soberanes, D., Feng, G., Murthy, V.N., Lauder, G.V., Dulac, C., | ||
Mathis, M.W., & Mathis, A. (2022). | ||
Nature Methods, 19, 496 - 504. | ||
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Conceptualization was done by A.M. and M.W.M. Formal analysis and code were done by J.L., A.M. and M.W.M. | ||
New deep architectures were designed by M.Z., S.Y. and A.M. GUIs were done by J.L., M.W.M. and T.N. | ||
Benchmark was set by S.S., M.W.M., A.M. and J.L. Marmoset data were gathered by W.M. and G.F. | ||
Conceptualization was done by A.M. and M.W.M. Formal analysis and code were done by J.L., A.M. and M.W.M. | ||
New deep architectures were designed by M.Z., S.Y. and A.M. GUIs were done by J.L., M.W.M. and T.N. | ||
Benchmark was set by S.S., M.W.M., A.M. and J.L. Marmoset data were gathered by W.M. and G.F. | ||
Marmoset behavioral analysis was carried out by W.M. Parenting data were gathered by M.M.R., A.M. and C.D. | ||
Tri-mouse data were gathered by D.S., A.M. and V.N.M. Fish data were gathered by V.D.S. and G.L. | ||
The article was written by A.M., M.W.M. and J.L. with input from all authors. | ||
Tri-mouse data were gathered by D.S., A.M. and V.N.M. Fish data were gathered by V.D.S. and G.L. | ||
The article was written by A.M., M.W.M. and J.L. with input from all authors. | ||
M.W.M. and A.M. co-supervised the project. | ||
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############################################################################################################ | ||
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@@ -110,6 +110,11 @@ J Lauer, [email protected] | https://github.com/jeylau | |
N Poulsen, [email protected] | https://github.com/n-poulsen | ||
S Ye, https://github.com/yeshaokai | ||
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Preprint: | ||
Ye, S., Filippova, A., Lauer, J., Vidal, M., Schneider, S., Qiu, T., Mathis, A., & Mathis, M.W. (2022). | ||
Preprint: | ||
Ye, S., Filippova, A., Lauer, J., Vidal, M., Schneider, S., Qiu, T., Mathis, A., & Mathis, M.W. (2022). | ||
SuperAnimal pretrained pose estimation models for behavioral analysis. https://arxiv.org/abs/2203.07436 | ||
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############################################################################################################ | ||
DeepLabCut 3.0+ additions: | ||
staty tuned, but includes BUCTD! |
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pip uninstall deeplabcut | ||
python3 setup.py sdist bdist_wheel | ||
pip install dist/deeplabcut-2.3.9-py3-none-any.whl | ||
pip install dist/deeplabcut-2.3.10-py3-none-any.whl |
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setuptools.setup( | ||
name="deeplabcut", | ||
version="2.3.9", | ||
version="2.3.10", | ||
author="A. & M.W. Mathis Labs", | ||
author_email="[email protected]", | ||
description="Markerless pose-estimation of user-defined features with deep learning", | ||
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