update links

DESCRIPTION

@@ -66,7 +66,7 @@ Description: Raman and (FT)IR spectral analysis tool for plastic particles and
     <doi:10.1177/0003702820929064>) using match_spec(). A Shiny app is available
     via run_app() or online at <https://openanalysis.org/openspecy/>.
 URL: https://github.com/wincowgerDEV/OpenSpecy-package/,
-    http://wincowger.com/OpenSpecy-package/
+    https://wincowger.com/OpenSpecy-package/
 BugReports: https://github.com/wincowgerDEV/OpenSpecy-package/issues/
 License: CC BY 4.0
 Encoding: UTF-8

README.md

@@ -9,7 +9,7 @@ Analyze, Process, Identify, and Share Raman and (FT)IR Spectra
 [![Codecov test coverage](https://codecov.io/gh/wincowgerDEV/OpenSpecy-package/branch/main/graph/badge.svg)](https://app.codecov.io/gh/wincowgerDEV/OpenSpecy-package?branch=main)
 [![License: CC BY 4.0](https://img.shields.io/badge/license-CC%20BY%204.0-lightgrey.svg)](https://creativecommons.org/licenses/by/4.0/)
 [![DOI](https://img.shields.io/badge/DOI-10.1021/acs.analchem.1c00123-blue.svg)](https://doi.org/10.1021/acs.analchem.1c00123)
-[![Website](https://img.shields.io/badge/web-openspecy.org-white)](https://wincowger.shinyapps.io/OpenSpecy/)
+[![Website](https://img.shields.io/badge/web-openspecy.org-white)](https://openanalysis.org/openspecy/)
 [![Gitter](https://badges.gitter.im/Open-Specy/community.svg)](https://app.gitter.im/#/room/#Open-Specy_community:gitter.im)
 <!-- badges: end -->
 
@@ -57,7 +57,7 @@ run_app()
 
 ## Simple workflow for single spectral identification
 
-See [package vignette](http://wincowger.com/OpenSpecy-package/articles/sop.html)
+See [package vignette](https://wincowger.com/OpenSpecy-package/articles/sop.html)
 for a detailed standard operating procedure.
 
 ```r

vignettes/sop.Rmd

@@ -36,7 +36,7 @@ The Open Specy R package is the backbone of the Shiny app. The choice is yours
 as to which you start with, we use both on a regular basis. The tutorial will
 talk through the R functions you can use to programatically analyze spectra. If
 you are looking for a tutorial about how to use the app see [this
-tutorial](http://wincowger.com/OpenSpecy-package/articles/app.html).
+tutorial](https://wincowger.com/OpenSpecy-package/articles/app.html).
 
 # Installation
 
@@ -52,7 +52,7 @@ To get started with the Open Specy user interface, access
 [https://openanalysis.org/openspecy/](https://openanalysis.org/openspecy/) or
 start the Shiny GUI directly from your own computer in R. If you are looking for
 a tutorial about how to use the app see [this
-tutorial](http://wincowger.com/OpenSpecy-package/articles/app.html).
+tutorial](https://wincowger.com/OpenSpecy-package/articles/app.html).
 
 ```{r, eval=FALSE}
 run_app()
@@ -98,7 +98,7 @@ The specific steps to converting your instrument's native files to .csv can be
 found in its software manual or you can check out
 [Spectragryph](https://www.effemm2.de/spectragryph/), which supports many
 spectral file conversions. For instructions, see [Spectragryph
-Tutorial](http://wincowger.com/OpenSpecy-package/articles/spectragryph.html).
+Tutorial](https://wincowger.com/OpenSpecy-package/articles/spectragryph.html).
 
 If you don't have your own data, you can use a test dataset.