Try skip doctest #2497
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| # This is a basic workflow to help you get started with Actions | |
| name: CI | |
| # Controls when the action will run. | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the master branch | |
| push: | |
| pull_request: | |
| merge_group: | |
| # run the pipeline on the 0th minute of the 0th hour of day 1 and 15 every month | |
| schedule: | |
| - cron: '0 0 1,15 * *' | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| # This workflow contains a single job called "build" | |
| ci: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-22.04 | |
| # Specify the python versions to test | |
| strategy: | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12"] | |
| # Environment variables | |
| env: | |
| POETRY_HOME: /opt/poetry | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - name: Print disk space | |
| run: df -h | |
| - name: Free Disk Space (Ubuntu) | |
| uses: jlumbroso/free-disk-space@main | |
| with: | |
| # this might remove tools that are actually needed, | |
| # if set to "true" but frees about 6 GB | |
| tool-cache: false | |
| # all of these default to true, but feel free to set to | |
| # "false" if necessary for your workflow | |
| android: true | |
| dotnet: true | |
| haskell: true | |
| large-packages: false | |
| docker-images: true | |
| swap-storage: true | |
| - name: Print disk space | |
| run: df -h | |
| - uses: actions/checkout@v3 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| # Runs a set of commands using the runners shell | |
| - name: set up ssh | |
| uses: webfactory/[email protected] | |
| with: | |
| ssh-private-key: | | |
| ${{ secrets.WIRC_STARTERPACK_TOKEN }} | |
| - name: install packages with conda | |
| shell: bash -el {0} | |
| run: | | |
| conda install -c conda-forge astromatic-source-extractor astromatic-scamp astromatic-swarp astromatic-psfex astrometry=0.95 gsl wcstools | |
| swarp -v | |
| scamp -v | |
| sex -v | |
| solve-field --version | |
| pip install --upgrade pip | |
| # Poetry install with poetry in an isolated environment | |
| python3 -m venv $POETRY_HOME | |
| $POETRY_HOME/bin/pip install poetry==2.0.0 | |
| $POETRY_HOME/bin/poetry --version | |
| $POETRY_HOME/bin/poetry install --with dev | |
| # Set up astrometry.net | |
| - name: astrometry.net index files | |
| run: | | |
| curl -o /usr/share/miniconda/envs/test/data/index-5200-43.fits https://portal.nersc.gov/project/cosmo/temp/dstn/index-5200/LITE/index-5200-43.fits | |
| curl -o /usr/share/miniconda/envs/test/data/index-5201-04.fits https://portal.nersc.gov/project/cosmo/temp/dstn/index-5200/LITE/index-5201-04.fits | |
| curl -o /usr/share/miniconda/envs/test/data/index-5204-13.fits https://portal.nersc.gov/project/cosmo/temp/dstn/index-5200/LITE/index-5204-13.fits | |
| curl -o /usr/share/miniconda/envs/test/data/index-5205-13.fits https://portal.nersc.gov/project/cosmo/temp/dstn/index-5200/LITE/index-5205-13.fits | |
| # WINTER | |
| curl -o /usr/share/miniconda/envs/test/data/index-5205-11.fits https://portal.nersc.gov/project/cosmo/temp/dstn/index-5200/LITE/index-5205-11.fits | |
| curl -o /usr/share/miniconda/envs/test/data/index-5203-11.fits https://portal.nersc.gov/project/cosmo/temp/dstn/index-5200/LITE/index-5203-11.fits | |
| curl -o /usr/share/miniconda/envs/test/data/index-5206-11.fits https://portal.nersc.gov/project/cosmo/temp/dstn/index-5200/LITE/index-5206-11.fits | |
| curl -o /usr/share/miniconda/envs/test/data/index-5204-11.fits https://portal.nersc.gov/project/cosmo/temp/dstn/index-5200/LITE/index-5204-11.fits | |
| # Set up database | |
| - name: postgres | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install postgresql | |
| sudo apt-get install postgresql-common | |
| sudo apt-get install postgresql-server-dev-14 | |
| sudo service postgresql restart | |
| sudo -u postgres psql -c "CREATE USER runner WITH PASSWORD 'runner_password'; GRANT ALL PRIVILEGES ON DATABASE postgres TO runner; ALTER USER runner WITH SUPERUSER;" | |
| git clone https://github.com/segasai/q3c.git | |
| make -C q3c | |
| sudo make -C q3c install | |
| - name: Print disk space | |
| run: df -h | |
| # First make sure the doc tests are up to date | |
| - name: Run doc tests | |
| shell: bash -el {0} | |
| run: | | |
| $POETRY_HOME/bin/poetry run make -C docs/ doctest | |
| # Runs a set of commands using the runners shell | |
| - name: Test the code | |
| shell: bash -el {0} | |
| env: | |
| OUTPUT_DATA_DIR : /home/runner/ | |
| PG_ADMIN_USER: runner | |
| PG_ADMIN_PWD: runner_password | |
| DB_USER: runner | |
| DB_PWD: runner_password | |
| WATCHDOG_EMAIL: ${{ secrets.WATCHDOG_EMAIL }} | |
| WATCHDOG_EMAIL_PASSWORD: ${{ secrets.WATCHDOG_EMAIL_PASSWORD }} | |
| WATCHDOG_EMAIL_RECIPIENTS: ${{ secrets.WATCHDOG_EMAIL_RECIPIENTS }} | |
| KOWALSKI_TOKEN: ${{ secrets.KOWALSKI_TOKEN }} | |
| FRITZ_TOKEN: ${{ secrets.FRITZ_TOKEN }} | |
| ANET_INDEX_DIR: /usr/share/miniconda/envs/test/data | |
| run: | | |
| TESTDATA_CHECK="True" $POETRY_HOME/bin/poetry run coverage run -m unittest discover tests/ | |
| - name: Run Coveralls | |
| continue-on-error: true | |
| if: ${{ success() }} | |
| shell: bash -el {0} | |
| run: | | |
| $POETRY_HOME/bin/poetry --no-ansi run coveralls --service=github | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Echo tag name | |
| run: echo "Tag is ${{ github.ref }}, Tagged is ${{ startsWith(github.ref, 'refs/tags/')}}, Python Check is ${{matrix.python-version == 3.11}}, Deploy is ${{ startsWith(github.ref, 'refs/tags/') && matrix.python-version == 3.11}}" | |
| # Build a tarball and push to Pypi if tagged with new version | |
| - name: Build and publish | |
| shell: bash -el {0} | |
| env: | |
| POETRY_PYPI_TOKEN_PYPI: ${{ secrets.PYPI_API_TOKEN }} | |
| # Only run if secrets.PYPI_API_TOKEN exists. | |
| if: ${{ startsWith(github.ref, 'refs/tags/') && success() && matrix.python-version == 3.11 && env.POETRY_PYPI_TOKEN_PYPI != ''}} | |
| run: | | |
| $POETRY_HOME/bin/poetry publish -n --build |