1 Initialize Build #191
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: 1 Initialize Build | |
| on: | |
| schedule: | |
| - cron: '22 2 * * *' | |
| workflow_dispatch: | |
| inputs: | |
| recordKey: | |
| description: "What record do you want to append to this run?" | |
| required: false | |
| default: "1" | |
| jobs: | |
| gbPull: | |
| name: Pull Files | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Pull most recent files to local | |
| uses: appleboy/[email protected] | |
| with: | |
| command_timeout: 360m | |
| host: ${{ secrets.SCHOST }} | |
| username: ${{ secrets.SCUSERNAME }} | |
| password: ${{ secrets.SCPASSWORD }} | |
| port: 22 | |
| proxy_host: ${{ secrets.STATHOST }} | |
| proxy_username: ${{ secrets.SCUSERNAME }} | |
| proxy_password: ${{ secrets.SCPASSWORD }} | |
| proxy_port: 22 | |
| script: | | |
| cd /sciclone/geograd/geoBoundaries/scripts/geoBoundaryBot/geoBoundaryBuilder | |
| echo "" > /sciclone/geograd/geoBoundaries/logs/gbBuilderCron/pullStat | |
| echo "" > /sciclone/geograd/geoBoundaries/logs/gbBuilderCron/lfsStat | |
| echo "" > /sciclone/geograd/geoBoundaries/logs/gbBuilderCron/pullJobStat | |
| qsub pullRun | |
| bash workflow/pullWatch.sh | |
| buildGBCore: | |
| name: Build Core Files | |
| needs: gbPull | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Commence the build | |
| uses: appleboy/[email protected] | |
| with: | |
| command_timeout: 360m | |
| host: ${{ secrets.SCHOST }} | |
| username: ${{ secrets.SCUSERNAME }} | |
| password: ${{ secrets.SCPASSWORD }} | |
| port: 22 | |
| proxy_host: ${{ secrets.STATHOST }} | |
| proxy_username: ${{ secrets.SCUSERNAME }} | |
| proxy_password: ${{ secrets.SCPASSWORD }} | |
| proxy_port: 22 | |
| script: | | |
| cd /sciclone/geograd/geoBoundaries/scripts/geoBoundaryBot/geoBoundaryBuilder | |
| echo "" > /sciclone/geograd/geoBoundaries/tmp/gbBuilderStage/buildStatus | |
| echo "" > /sciclone/geograd/geoBoundaries/logs/gbBuilder/buildJobStat | |
| qsub buildRunVortex | |
| bash workflow/buildWatch.sh | |
| set gbid=`qstat -ru dsmillerrunfol | grep "gbBuilder" | awk '{print $1}'` | |
| echo $gbid | |
| qdel $gbid | |
| commitGbCore: | |
| name: Commit Core Files | |
| needs: buildGBCore | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Commit Core Files (LFS) + Build Metadata | |
| uses: appleboy/[email protected] | |
| with: | |
| command_timeout: 360m | |
| host: ${{ secrets.SCHOST }} | |
| username: ${{ secrets.SCUSERNAME }} | |
| password: ${{ secrets.SCPASSWORD }} | |
| port: 22 | |
| proxy_host: ${{ secrets.STATHOST }} | |
| proxy_username: ${{ secrets.SCUSERNAME }} | |
| proxy_password: ${{ secrets.SCPASSWORD }} | |
| proxy_port: 22 | |
| script: | | |
| cd /sciclone/geograd/geoBoundaries/scripts/geoBoundaryBot/geoBoundaryBuilder | |
| echo "" > /sciclone/geograd/geoBoundaries/logs/gbBuilderCommitCSV/commitStatus | |
| echo "" > /sciclone/geograd/geoBoundaries/logs/gbBuilder/commitJobStat | |
| qsub commitBuild | |
| bash workflow/commitWatch.sh |