use CWL version v1.2 (final not dev)

workflowhub-eu · Mar 24, 2022 · 42469c0 · 42469c0
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commit 42469c0
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diff --git a/examples/covid19/genomics/Galaxy-Workflow-COVID-19__Assembly.cwl b/examples/covid19/genomics/Galaxy-Workflow-COVID-19__Assembly.cwl
@@ -1,5 +1,5 @@
 class: Workflow
-cwlVersion: v1.2.0-dev2
+cwlVersion: v1.2
 doc: 'Abstract CWL Automatically generated from the Galaxy workflow file: COVID-19:
   Assembly'
 inputs:

diff --git a/examples/covid19/genomics/Galaxy-Workflow-COVID-19__MCRA.cwl b/examples/covid19/genomics/Galaxy-Workflow-COVID-19__MCRA.cwl
@@ -1,5 +1,5 @@
 class: Workflow
-cwlVersion: v1.2.0-dev2
+cwlVersion: v1.2
 doc: 'Abstract CWL Automatically generated from the Galaxy workflow file: COVID-19:
   MCRA'
 inputs:

diff --git a/examples/covid19/genomics/Galaxy-Workflow-COVID-19__RecSel.cwl b/examples/covid19/genomics/Galaxy-Workflow-COVID-19__RecSel.cwl
@@ -1,5 +1,5 @@
 class: Workflow
-cwlVersion: v1.2.0-dev2
+cwlVersion: v1.2
 doc: 'Abstract CWL Automatically generated from the Galaxy workflow file: COVID-19:
   RecSel'
 inputs:

diff --git a/examples/covid19/genomics/Galaxy-Workflow-COVID-19__S-gene_AA.cwl b/examples/covid19/genomics/Galaxy-Workflow-COVID-19__S-gene_AA.cwl
@@ -1,5 +1,5 @@
 class: Workflow
-cwlVersion: v1.2.0-dev2
+cwlVersion: v1.2
 doc: 'Abstract CWL Automatically generated from the Galaxy workflow file: COVID-19:
   S-gene AA'
 inputs:

diff --git a/examples/covid19/genomics/Galaxy-Workflow-COVID-19__SE_Variation.cwl b/examples/covid19/genomics/Galaxy-Workflow-COVID-19__SE_Variation.cwl
@@ -1,5 +1,5 @@
 class: Workflow
-cwlVersion: v1.2.0-dev2
+cwlVersion: v1.2
 doc: 'Abstract CWL Automatically generated from the Galaxy workflow file: COVID-19:
   SE Variation'
 inputs:

diff --git a/examples/covid19/genomics/Galaxy-Workflow-COVID-19__read_pre-processing_from_SRA_data.cwl b/examples/covid19/genomics/Galaxy-Workflow-COVID-19__read_pre-processing_from_SRA_data.cwl
@@ -1,5 +1,5 @@
 class: Workflow
-cwlVersion: v1.2.0-dev2
+cwlVersion: v1.2
 doc: 'Abstract CWL Automatically generated from the Galaxy workflow file: COVID-19:
   read pre-processing from SRA data'
 inputs:

diff --git a/examples/simple_workflow_cwl-interface.cwl b/examples/simple_workflow_cwl-interface.cwl
@@ -1,4 +1,4 @@
-cwlVersion: v1.0
+cwlVersion: v1.2
 class: Workflow
 label: Abstract CWL workflow automatically generated from a Galaxy workflow v2 file 
 inputs:

diff --git a/examples/simple_workflow_cwl_automatic.cwl b/examples/simple_workflow_cwl_automatic.cwl
@@ -1,5 +1,5 @@
 class: Workflow
-cwlVersion: v1.0
+cwlVersion: v1.2
 inputs:
   0/output:
     format: Input files have no info about format

diff --git a/examples/simple_workflow_galaxy.cwl b/examples/simple_workflow_galaxy.cwl
@@ -1,5 +1,5 @@
 class: Workflow
-cwlVersion: v1.2.0-dev2
+cwlVersion: v1.2
 doc: 'Abstract CWL Automatically generated from the Galaxy workflow file: Simple workflow'
 inputs:
   reads_1:

diff --git a/galaxy2cwl/get_cwl_interface.py b/galaxy2cwl/get_cwl_interface.py
@@ -120,7 +120,7 @@ def process_format1_json(wf_dict):
             step_cwl_entry['run'] = step_run_dict
             step_cwl_entry['out'] = step_wf_out
     cwl_out['steps']=steps
-    cwl_out['cwlVersion']='v1.2.0-dev2'
+    cwl_out['cwlVersion']='v1.2'
     cwl_out['class']='Workflow'
     cwl_out['doc']=cwl_doc
     cwl_out['inputs']=wf_inputs
@@ -268,7 +268,7 @@ def process_format2_yaml(wf_dict):
             wf_outputs[output]=output_details
     cwl_out={}
     cwl_out['steps']=steps
-    cwl_out['cwlVersion']='v1.2.0-dev1'
+    cwl_out['cwlVersion']='v1.2'
     cwl_out['class']='Workflow'
     cwl_out['doc']=cwl_doc
     cwl_out['inputs']=wf_inputs