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@wtsi-npg

Wellcome Sanger Institute - NPG

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  1. illumina2bam illumina2bam Public

    Generate and process BAM files from Illumina sequencing instrument files

    Java 23 15

  2. baton baton Public

    iRODS client programs and API

    C 19 19

  3. npg_seq_pipeline npg_seq_pipeline Public

    Processing and analysis of data coming from Illumina sequencing machines

    Perl 9 17

  4. bambi bambi Public

    Process Illumina instrument data into SAM/BAM/CRAM files.

    C 9 14

  5. Percolate Percolate Public archive

    A parallel workflow management application.

    Ruby 6 3

  6. genotyping genotyping Public

    Components of the WTSI genotype analysis pipeline.

    Perl 5 6

Repositories

Showing 10 of 84 repositories
  • npg_seq_pipeline Public

    Processing and analysis of data coming from Illumina sequencing machines

    Perl 9 17 23 8 Updated Apr 2, 2025
  • ml_warehouse Public

    Perl DBIx binding to a warehouse housing data from multiple LIM systems

    Perl 3 14 1 0 Updated Apr 2, 2025
  • valet Public

    Automated data mangement for Oxford Nanopore DNA sequencing instruments

    Go 2 GPL-3.0 4 4 3 Updated Mar 31, 2025
  • npg_irods Public

    Tools for managing HTS (BAM and CRAM) format files in iRODS.

    Perl 2 GPL-3.0 17 17 2 Updated Mar 31, 2025
  • containers Public

    Singularity and Docker material

    Shell 1 6 7 0 Updated Mar 31, 2025
  • npg-irods-python Public

    Applications for the management of data and metadata in iRODS

    Python 1 GPL-3.0 8 1 3 Updated Mar 30, 2025
  • irods-metadata Public

    Description of a subset of metadata used in WTSI iRODS

    2 2 0 0 Updated Mar 29, 2025
  • partisan Public

    A Python client API for iRODS

    Python 1 GPL-3.0 4 0 0 Updated Mar 28, 2025
  • npg_notifications Public
    Python 0 4 2 4 Updated Mar 28, 2025
  • hrr_tools Public

    Framework used to help with evaluating tools for the removal of human contaminated reads in DNA sequencing data

    Nextflow 1 0 0 0 Updated Mar 27, 2025
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irods baton