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Cope with UTF8 in headers #87

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dkj opened this issue Mar 10, 2016 · 0 comments
Open

Cope with UTF8 in headers #87

dkj opened this issue Mar 10, 2016 · 0 comments

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@dkj
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dkj commented Mar 10, 2016

Info including long UTF8 characters destined for fields such as study descriptions going into BAM/SAM header records e.g. CL of @PG or DS of @RG (from command line or sourced in other files) gets corrupted by (at least our ancient version of) Picard's StringUtils charsToBytes and stringToBytes
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