run-tests.yml

name: Test

on:
  push:
    branches: [master, devel]
  pull_request:
    branches: [master, devel] 

jobs:

  test:
    runs-on: ubuntu-latest

    services:
      mysql:
        image: "mysql:8.0"
        ports:
          - "3306:3306"
        options: >-
          --health-cmd "mysqladmin ping"
          --health-interval 10s
          --health-timeout 5s
          --health-retries 10
        env:
          MYSQL_RANDOM_ROOT_PASSWORD: yes
          MYSQL_TCP_PORT: 3306
          MYSQL_USER: "test"
          MYSQL_PASSWORD: "test"
          MYSQL_DATABASE: "study_notify"

      porch:
        image: "ghcr.io/wtsi-npg/python-3.10-npg-porch-2.0.0"
        ports:
          - "8081:8081"
        options: >-
          --health-cmd "curl -f http://localhost:8081"
          --health-interval 10s
          --health-timeout 5s
          --health-retries 10

    steps:
      - uses: actions/checkout@v4

      - name: Install Poetry
        run: |
          pipx install poetry

      - uses: actions/setup-python@v5
        with:
          python-version: '3.11'
          architecture: 'x64'

      - name: Run poetry install
        run: |
          poetry env use '3.11'
          poetry install

      - name: Run pytest
        run: |
          poetry run pytest

      - name: Run linter (ruff)
        run: |
          poetry run ruff check --output-format=github .