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clustering_helpers
clustering_helpers
 
 
helpers
helpers
 
 
temp
temp
 
 
.DS_Store
.DS_Store
 
 
.gitignore
.gitignore
 
 
AllDaysPhraseLockedSingleROIimage.m
AllDaysPhraseLockedSingleROIimage.m
 
 
Analyses_ManualROIs_All_syllable_selective.m
Analyses_ManualROIs_All_syllable_selective.m
 
 
Analyses_ManualROIs_Seek_ActiveROIperPhraseTpe.m
Analyses_ManualROIs_Seek_ActiveROIperPhraseTpe.m
 
 
Analyses_ManualROIs_Seek_LongRangeCorrelations.m
Analyses_ManualROIs_Seek_LongRangeCorrelations.m
 
 
Analyses_ManualROIs_Summary_and_Examples.m
Analyses_ManualROIs_Summary_and_Examples.m
 
 
Analyses_SingleROI_SingleDay_PhraseLocked_dff.m
Analyses_SingleROI_SingleDay_PhraseLocked_dff.m
 
 
Analyses_SingleROI_SingleDay_SpikingPhaseInPhrase.m
Analyses_SingleROI_SingleDay_SpikingPhaseInPhrase.m
 
 
Analyses_create_PSTs.m
Analyses_create_PSTs.m
 
 
Analyses_create_cross_validated_PSTs.m
Analyses_create_cross_validated_PSTs.m
 
 
Calculate_phrase_locked_activity_histogram.m
Calculate_phrase_locked_activity_histogram.m
 
 
MainPreprocessPipe.m
MainPreprocessPipe.m
 
 
ManyDaysManualROIsDataExtraction.m
ManyDaysManualROIsDataExtraction.m
 
 
Multiple_repetitions_phrase_locked_ROI.m
Multiple_repetitions_phrase_locked_ROI.m
 
 
PhraseLockedSingleDayManualROIsSpikingStiatistics.m
PhraseLockedSingleDayManualROIsSpikingStiatistics.m
 
 
PipeLine.m~
PipeLine.m~
 
 
PipeLine_batch_withCNMFE.m
PipeLine_batch_withCNMFE.m
 
 
README.md
README.md
 
 
SingleDayManualROIsDataExtraction.m
SingleDayManualROIsDataExtraction.m
 
 
SingleDayPhraseAlignedROIs.m
SingleDayPhraseAlignedROIs.m
 
 
SingleDayPhraseAlignment.m
SingleDayPhraseAlignment.m
 
 
SingleDayPhraseLockedSingleROIimage.m
SingleDayPhraseLockedSingleROIimage.m
 
 
SingleFilePhraseAlignedROIs.m
SingleFilePhraseAlignedROIs.m
 
 
SingleMoviePipe_spectrogram_and_ROIs.m
SingleMoviePipe_spectrogram_and_ROIs.m
 
 
align_single_trials.m
align_single_trials.m
 
 
models_from_raster_FinchTemplate.m
models_from_raster_FinchTemplate.m
 
 

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VideoAnalysisPipeline

Here I keep pipeline preprocessing and analysis scripts for handling fluorescent calcium signaling videos and annotated audio files.

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