Skip to content

Commit

Permalink
Witvliet_DataReaders
Browse files Browse the repository at this point in the history
  • Loading branch information
@yasinthanvickneswaran
yasinthanvickneswaran committed Feb 9, 2024
1 parent 5fde766 commit 62d13ec
Showing 1 changed file with 97 additions and 6 deletions.
103 changes: 97 additions & 6 deletions examples/test/Comparison.ipynb
View file
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@
"cells": [
{
"cell_type": "code",
"execution_count": 1,
"execution_count": 2,
"id": "481d3c70-313a-4979-8475-d4a0089a8a0b",
"metadata": {
"tags": []
Expand Down Expand Up @@ -55,7 +55,35 @@
"c302 >>> Opened the Excel file: c:\\Users\\vyasi\\anaconda3\\envs\\ProWorm\\lib\\site-packages\\c302/data/NeuronConnectFormatted.xls\n",
"c302 >>> Opened Excel file: c:\\Users\\vyasi\\anaconda3\\envs\\ProWorm\\lib\\site-packages\\c302/data/NeuronConnectFormatted.xls\n",
"\n",
"****** Importing dataset Witvliet using c302.W_SpreadsheetDataReader ******\n",
"****** Importing dataset Witvliet(L1_1) using c302.WL1_SpreadsheetDataReader1 ******\n",
"c302 >>> Opened Excel file..: c:\\Users\\vyasi\\anaconda3\\envs\\ProWorm\\lib\\site-packages\\c302/data/witvliet_2020_1_L1.xlsx\n",
"c302 >>> Opened Excel file: c:\\Users\\vyasi\\anaconda3\\envs\\ProWorm\\lib\\site-packages\\c302/data/witvliet_2020_1_L1.xlsx\n",
"\n",
"****** Importing dataset Witvliet(L1_2) using c302.WL1_SpreadsheetDataReader2 ******\n",
"c302 >>> Opened Excel file..: c:\\Users\\vyasi\\anaconda3\\envs\\ProWorm\\lib\\site-packages\\c302/data/witvliet_2020_2_L1.xlsx\n",
"c302 >>> Opened Excel file: c:\\Users\\vyasi\\anaconda3\\envs\\ProWorm\\lib\\site-packages\\c302/data/witvliet_2020_2_L1.xlsx\n",
"\n",
"****** Importing dataset Witvliet(L1_3) using c302.WL1_SpreadsheetDataReader3 ******\n",
"c302 >>> Opened Excel file..: c:\\Users\\vyasi\\anaconda3\\envs\\ProWorm\\lib\\site-packages\\c302/data/witvliet_2020_3_L1.xlsx\n",
"c302 >>> Opened Excel file: c:\\Users\\vyasi\\anaconda3\\envs\\ProWorm\\lib\\site-packages\\c302/data/witvliet_2020_3_L1.xlsx\n",
"\n",
"****** Importing dataset Witvliet(L1_4) using c302.WL1_SpreadsheetDataReader4 ******\n",
"c302 >>> Opened Excel file..: c:\\Users\\vyasi\\anaconda3\\envs\\ProWorm\\lib\\site-packages\\c302/data/witvliet_2020_4_L1.xlsx\n",
"c302 >>> Opened Excel file: c:\\Users\\vyasi\\anaconda3\\envs\\ProWorm\\lib\\site-packages\\c302/data/witvliet_2020_4_L1.xlsx\n",
"\n",
"****** Importing dataset Witvliet(L2) using c302.WL2_SpreadsheetDataReader ******\n",
"c302 >>> Opened Excel file..: c:\\Users\\vyasi\\anaconda3\\envs\\ProWorm\\lib\\site-packages\\c302/data/witvliet_2020_5_L2.xlsx\n",
"c302 >>> Opened Excel file: c:\\Users\\vyasi\\anaconda3\\envs\\ProWorm\\lib\\site-packages\\c302/data/witvliet_2020_5_L2.xlsx\n",
"\n",
"****** Importing dataset Witvliet(L3) using c302.WL3_SpreadsheetDataReader ******\n",
"c302 >>> Opened Excel file..: c:\\Users\\vyasi\\anaconda3\\envs\\ProWorm\\lib\\site-packages\\c302/data/witvliet_2020_6_L3.xlsx\n",
"c302 >>> Opened Excel file: c:\\Users\\vyasi\\anaconda3\\envs\\ProWorm\\lib\\site-packages\\c302/data/witvliet_2020_6_L3.xlsx\n",
"\n",
"****** Importing dataset Witvliet(adult7) using c302.W7_SpreadsheetDataReader ******\n",
"c302 >>> Opened Excel file..: c:\\Users\\vyasi\\anaconda3\\envs\\ProWorm\\lib\\site-packages\\c302/data/witvliet_2020_7_adult.xlsx\n",
"c302 >>> Opened Excel file: c:\\Users\\vyasi\\anaconda3\\envs\\ProWorm\\lib\\site-packages\\c302/data/witvliet_2020_7_adult.xlsx\n",
"\n",
"****** Importing dataset Witvliet(adult8) using c302.W_SpreadsheetDataReader ******\n",
"c302 >>> Opened Excel file..: c:\\Users\\vyasi\\anaconda3\\envs\\ProWorm\\lib\\site-packages\\c302/data/witvliet_2020_8_adult.xlsx\n",
"c302 >>> Opened Excel file: c:\\Users\\vyasi\\anaconda3\\envs\\ProWorm\\lib\\site-packages\\c302/data/witvliet_2020_8_adult.xlsx\n"
]
Expand All @@ -75,7 +103,14 @@
" \"OpenWorm\": \"c302.OpenWormReader\",\n",
" \"WormNeuroAtlas\": \"c302.WormNeuroAtlasReader\",\n",
" \"Varshney\": \"c302.VarshneyDataReader\",\n",
" \"Witvliet\": \"c302.W_SpreadsheetDataReader\"}\n",
" \"Witvliet(L1_1)\": \"c302.WL1_SpreadsheetDataReader1\",\n",
" \"Witvliet(L1_2)\": \"c302.WL1_SpreadsheetDataReader2\",\n",
" \"Witvliet(L1_3)\": \"c302.WL1_SpreadsheetDataReader3\",\n",
" \"Witvliet(L1_4)\": \"c302.WL1_SpreadsheetDataReader4\",\n",
" \"Witvliet(L2)\": \"c302.WL2_SpreadsheetDataReader\",\n",
" \"Witvliet(L3)\": \"c302.WL3_SpreadsheetDataReader\",\n",
" \"Witvliet(adult7)\": \"c302.W7_SpreadsheetDataReader\",\n",
" \"Witvliet(adult8)\": \"c302.W_SpreadsheetDataReader\"}\n",
"\n",
"for name, reader in readers.items():\n",
"\n",
Expand Down Expand Up @@ -127,7 +162,7 @@
},
{
"cell_type": "code",
"execution_count": 2,
"execution_count": 3,
"id": "2308051a-0a24-44db-a481-fc0d0f2af4fb",
"metadata": {
"tags": []
Expand All @@ -146,7 +181,14 @@
" <th>OpenWorm</th>\n",
" <th>WormNeuroAtlas</th>\n",
" <th>Varshney</th>\n",
" <th>Witvliet</th>\n",
" <th>Witvliet(L1_1)</th>\n",
" <th>Witvliet(L1_2)</th>\n",
" <th>Witvliet(L1_3)</th>\n",
" <th>Witvliet(L1_4)</th>\n",
" <th>Witvliet(L2)</th>\n",
" <th>Witvliet(L3)</th>\n",
" <th>Witvliet(adult7)</th>\n",
" <th>Witvliet(adult8)</th>\n",
" </tr>\n",
" </thead>\n",
" <tbody>\n",
Expand All @@ -158,6 +200,13 @@
" <td>302</td>\n",
" <td>300</td>\n",
" <td>281</td>\n",
" <td>190</td>\n",
" <td>197</td>\n",
" <td>201</td>\n",
" <td>207</td>\n",
" <td>214</td>\n",
" <td>219</td>\n",
" <td>225</td>\n",
" <td>222</td>\n",
" </tr>\n",
" <tr>\n",
Expand All @@ -169,6 +218,13 @@
" <td>0</td>\n",
" <td>280</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" </tr>\n",
" <tr>\n",
" <td>Num N->N conns</td>\n",
Expand All @@ -178,6 +234,13 @@
" <td>5805</td>\n",
" <td>1650</td>\n",
" <td>6417</td>\n",
" <td>858</td>\n",
" <td>1110</td>\n",
" <td>1106</td>\n",
" <td>1345</td>\n",
" <td>1807</td>\n",
" <td>1739</td>\n",
" <td>2493</td>\n",
" <td>2496</td>\n",
" </tr>\n",
" <tr>\n",
Expand All @@ -189,6 +252,13 @@
" <td>0</td>\n",
" <td>280</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" </tr>\n",
" <tr>\n",
" <td>Num N->M conns</td>\n",
Expand All @@ -199,6 +269,13 @@
" <td>0</td>\n",
" <td>6417</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" </tr>\n",
" <tr>\n",
" <td>N neurotransmitters</td>\n",
Expand All @@ -208,6 +285,13 @@
" <td>Acetylcholine (2008)<br/>Acetylcholine_GJ (222)<br/>Acetylcholine_Tyramine (29)<br/>Acetylcholine_Tyramine_GJ (13)<br/>Dopamine (98)<br/>Dopamine_GJ (13)<br/>FMRFamide (170)<br/>FMRFamide_GJ (90)<br/>FRMFemide (45)<br/>FRMFemide_GJ (33)<br/>GABA (182)<br/>GABA_GJ (76)<br/>Generic_GJ (1356)<br/>Glutamate (824)<br/>Glutamate_GJ (324)<br/>Octapamine (19)<br/>Octapamine_GJ (4)<br/>Serotonin (163)<br/>Serotonin_Acetylcholine (91)<br/>Serotonin_Acetylcholine_GJ (13)<br/>Serotonin_GJ (20)<br/>Serotonin_Glutamate (11)<br/>Serotonin_Glutamate_GJ (1)<br/></td>\n",
" <td>Generic_GJ (1650)<br/></td>\n",
" <td>Chemical_Synapse (5386)<br/>Generic_GJ (1031)<br/></td>\n",
" <td>Chemical_Synapse (775)<br/>Generic_GJ (83)<br/></td>\n",
" <td>Chemical_Synapse (986)<br/>Generic_GJ (124)<br/></td>\n",
" <td>Chemical_Synapse (1012)<br/>Generic_GJ (94)<br/></td>\n",
" <td>Chemical_Synapse (1136)<br/>Generic_GJ (209)<br/></td>\n",
" <td>Chemical_Synapse (1515)<br/>Generic_GJ (292)<br/></td>\n",
" <td>Chemical_Synapse (1525)<br/>Generic_GJ (214)<br/></td>\n",
" <td>Chemical_Synapse (2202)<br/>Generic_GJ (291)<br/></td>\n",
" <td>Chemical_Synapse (2186)<br/>Generic_GJ (310)<br/></td>\n",
" </tr>\n",
" <tr>\n",
Expand All @@ -219,6 +303,13 @@
" <td></td>\n",
" <td>EJ (1031)<br/>NMJ (153)<br/>R (773)<br/>Rp (1885)<br/>S (950)<br/>Sp (1625)<br/></td>\n",
" <td>Chemical_Synapse (1)<br/></td>\n",
" <td>Chemical_Synapse (1)<br/></td>\n",
" <td>Chemical_Synapse (1)<br/></td>\n",
" <td>Chemical_Synapse (1)<br/></td>\n",
" <td>Chemical_Synapse (1)<br/></td>\n",
" <td>Chemical_Synapse (1)<br/></td>\n",
" <td>Chemical_Synapse (1)<br/></td>\n",
" <td>Chemical_Synapse (1)<br/></td>\n",
" </tr>\n",
" </tbody>\n",
"</table>"
Expand All @@ -227,7 +318,7 @@
"<IPython.core.display.HTML object>"
]
},
"execution_count": 2,
"execution_count": 3,
"metadata": {},
"output_type": "execute_result"
}
Expand Down

0 comments on commit 62d13ec

Please sign in to comment.