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Sijia Liu edited this page Dec 5, 2017
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- javasrc - source folder includes java source codes distributed
- autosrc - source folder automatically generated by JCas_gen for the centralized type system
- descsrc - contains types and primitive analysis engines, collection readers, and cas consumers (not recommended to modify if you have limited knowledge with respect to UIMA)
- desc - example descriptors for aggregate analysis engines and collection processing engines
- medtaggerdescsrc -- source folders contains types and primitive analysis engines, collection readers, and cas consumers in MedTagger
- lib - a collection of libraries that MedTagger is based on
- resources - resources required to run MedTime (including those for running MedTagger)
- testdata - shipped test data to run all annotators
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Primary Annotators
MedTimeAE.xml: finds temporal expressions and normalizes them according to the TIMEX3 TimeML annotation standard -
Cas Consumer
MedTimeWriter.xml: generates i2b2 Timex3 output format -
Aggregate TAE
MedTimeAggregateTAE.xml -
Collection Processing Engine
MedTimeCPE.xml
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resources/medtimeresources/i2b2/normalization- normalized forms of time expression -
resources/medtimeresources/i2b2/repattern- regular expressions of time information -
resources/medtimeresources/i2b2/rules- rules to extract date, time, duration, and frequency -
resources/medtimeresources/used_resources.txt- all paths used in resources
The detailed explanation of resource usage can be found in HeidelTime Wiki (https://github.com/HeidelTime/heideltime).