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  1. HG002_dimelo_mA_density_calculation HG002_dimelo_mA_density_calculation Public

    Jupyter Notebook

  2. HG002_dimelo_raw_data_processing HG002_dimelo_raw_data_processing Public

    This script presents steps to process raw pod5 files after the sequencing step from nanopore

  3. CDR_region_summary_calculation CDR_region_summary_calculation Public

    Jupyter Notebook

  4. border_analysis border_analysis Public

    Jupyter Notebook

  5. ONT_read_CDR_spanning ONT_read_CDR_spanning Public

    Jupyter Notebook

  6. bedgraph_A-cpg bedgraph_A-cpg Public

    Here is a pipeline that turns the methylation (either A or cpg) into a bedgraph file