synthetic_EHR_data

This repository records the work done for synthetic ehr project

generating 1% dataset

Run retrieving_files.py, this generates a 1% omop dataset.

extract features from the 1 % dataset

Run process_omop, this converts the omop condition table to a pivoted table where each row is a patient, and each columns is a medical code.

python process_omop.py condition_occurrence.csv condition binary