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fix typo (case sensitive)
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sakim8048 committed Apr 15, 2024
1 parent babb3e0 commit 653e858
Showing 1 changed file with 3 additions and 2 deletions.
5 changes: 3 additions & 2 deletions pynta/main.py
Original file line number Diff line number Diff line change
Expand Up @@ -485,15 +485,16 @@ def setup_transition_states(self,adsorbates_finished=False):
"run_kwargs": {"fmax" : self.fmaxopt, "steps" : 70},"constraints": ["freeze up to {}".format(self.freeze_ind)]}
# if irc_mode = "skip" : do not conduct IRC
else:
self.irc_mode = "skip"
print("==Skip IRC: IRC is not conducted==")
logger.info("==Skip IRC: IRC is not conducted==")
IRC_obj_dict = {}
pass

ts_path = os.path.join(self.path,"TS"+str(i))
os.makedirs(ts_path)
ts_task = MolecularTSEstimate({"rxn": rxn,"ts_path": ts_path,"slab_path": self.slab_path,"adsorbates_path": os.path.join(self.path,"Adsorbates"),
"rxns_file": self.rxns_file,"path": self.path,"metal": self.metal,"facet": self.surface_type, "out_path": ts_path, "irc_mode": self.irc_mode,
"spawn_jobs": True, "opt_obj_dict": opt_obj_dict, "vib_obj_dict": vib_obj_dict,
"spawn_jobs": True, "opt_obj_dict": opt_obj_dict, "vib_obj_dict": vib_obj_dict, "IRC_obj_dict": IRC_obj_dict,
"nprocs": 48, "name_to_adjlist_dict": self.name_to_adjlist_dict,
"gratom_to_molecule_atom_maps":{sm: {str(k):v for k,v in d.items()} for sm,d in self.gratom_to_molecule_atom_maps.items()},
"gratom_to_molecule_surface_atom_maps":{sm: {str(k):v for k,v in d.items()} for sm,d in self.gratom_to_molecule_surface_atom_maps.items()},
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