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build: create independent environment files #111

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a538d30
build: set correct channel in `environment.root.yml`
deliaBlue Sep 19, 2023
e1906c8
docs: update installation steps
deliaBlue Sep 22, 2023
c3e867e
build: create dev environmwnt with singularity
deliaBlue Sep 22, 2023
d4ae82f
ci: update testest
deliaBlue Sep 22, 2023
3bd5f33
docs: move environemtn files
deliaBlue Sep 22, 2023
2bca799
ci: add environment display
deliaBlue Sep 22, 2023
70f1f0a
build: swap channels
deliaBlue Sep 22, 2023
9aca076
build: swap channels
deliaBlue Sep 22, 2023
a66e46c
build: pin versions
deliaBlue Sep 27, 2023
900d063
ci: fix environment files directory
deliaBlue Oct 3, 2023
5df8005
ci: split conda and singularity snakemake tests
deliaBlue Oct 3, 2023
0b257d3
build: update gffutils version
deliaBlue Oct 3, 2023
64e9143
build: disable channel
deliaBlue Oct 3, 2023
f64361d
build: disable 'defaults' channel
deliaBlue Oct 3, 2023
fb5576f
ci: update tests with mamba options
deliaBlue Oct 18, 2023
9791ed4
build remove nondefualts channel
deliaBlue Oct 18, 2023
66b9448
ci: specify installation channels
deliaBlue Oct 18, 2023
dd26a02
ci: include Mambaforge as an installer
deliaBlue Oct 19, 2023
abef37c
ci: fix static code analysis
deliaBlue Oct 20, 2023
4b46293
ci: fix static code analysis
deliaBlue Oct 20, 2023
bdc8758
refactor: fix variable types
deliaBlue Oct 25, 2023
e82a7c0
refactor: fix return type
deliaBlue Oct 25, 2023
a5a4380
build: upgrade and pin dependency versions
deliaBlue Oct 25, 2023
f5add74
merge with fix_static_code branch
deliaBlue Oct 25, 2023
2063c38
build: upgrade and pin dependecies versions
deliaBlue Oct 25, 2023
c178635
merge dev branch
deliaBlue Nov 16, 2023
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2 changes: 1 addition & 1 deletion environment.root.yml
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
name: mirflowz
channels:
- bioconda
- conda-forge
dependencies:
- singularity>=3.5.2