refactor: update Dockerfile

zavolanlab · Oct 16, 2023 · 21fbfc3 · 21fbfc3
1 parent 5d720b0
commit 21fbfc3
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Showing 2 changed files with 3 additions and 5 deletions.
diff --git a/Dockerfile b/Dockerfile
@@ -31,9 +31,8 @@ RUN groupadd -r ${GROUP} && useradd --no-log-init -r -g ${GROUP} ${USER}
 WORKDIR ${WORKDIR}
 RUN chown -R ${USER}:${GROUP} ${WORKDIR} && chmod 700 ${WORKDIR}
 USER ${USER}
-RUN echo "source activate scrnasim" > ~/.bashrc
-ENV PATH /opt/conda/envs/scrnasim/bin:$PATH
+RUN echo "source activate scrnasim-toolz" > ~/.bashrc
+ENV PATH /opt/conda/envs/scrnasim-toolz/bin:$PATH
 
 # SET ENTRYPOINT
-ENTRYPOINT ["transcript-sampler"]
-CMD ["-v"]
+CMD ["transcript-sampler", "-v"]
diff --git a/environment.yml b/environment.yml
@@ -10,6 +10,5 @@ dependencies:
   - numpy>=1.23.3
   - pandas>=1.4.4
   - python>=3.6, <=3.10
-  - pyarrow
   - pip:
     - -e .