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1. PhyloInfer PhyloInfer Public

   Developing efficient Bayesian phylogenetic inference methods

   Python 11 5

2. RNSHMC RNSHMC Public

   Hamiltonian Monte Carlo Acceleration using Surrogate Functions with Random Bases

   MATLAB 4 1

3. sbn sbn Public

   Generalizing Phylogenetic Posterior Estimator from MCMC samples via subplit Bayesian networks

   Jupyter Notebook 9 7

4. vbpi-nf vbpi-nf Public

   Code for improved variational Bayesian phylogenetic inference with normalizing flows

   Python 7 5

5. vbpi-torch vbpi-torch Public

   Pytorch Implementation of Variational Bayesian Phylogenetic Inference

   Turing 4 3

6. vbpi-gnn vbpi-gnn Public

   Code for learnable topological features for phylogenetic inference via graph neural networks

   Python 7 3