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annotate_proteome writes out both nucl- and protein coordinates #11

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@karchern karchern commented Dec 5, 2024

This fixes a stupid oversight on Quinten and my end.

Briefly, the quantification part of the tool requires annotations on the nucleotide level (which is what annotate_proteome exclusively returns until this commit).

So this commit leads to both nucleotide- and protein coordinates being returned by the annotator function, which should resolve the confusion.

…ide coordinates
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