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Merge updates in submodules of CICE, CMEPS, MOM6, WW3, and stochasti…
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…c_physics

    Upp CATChem grib2 output

    Update configure files for S2S run due to the issue in
    NOAA-EMC/fv3atm#838
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zhanglikate committed May 21, 2024
1 parent 76ddf9e commit 6176ba5
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Showing 9 changed files with 13 additions and 13 deletions.
2 changes: 1 addition & 1 deletion CICE-interface/CICE
Submodule CICE updated 70 files
+1 −1 .github/PULL_REQUEST_TEMPLATE.md
+4 −2 .github/workflows/test-cice.yml
+16 −4 cicecore/cicedyn/analysis/ice_history.F90
+14 −8 cicecore/cicedyn/analysis/ice_history_shared.F90
+19 −3 cicecore/cicedyn/dynamics/ice_dyn_eap.F90
+52 −11 cicecore/cicedyn/dynamics/ice_dyn_evp.F90
+104 −10 cicecore/cicedyn/dynamics/ice_dyn_shared.F90
+12 −19 cicecore/cicedyn/dynamics/ice_dyn_vp.F90
+29 −112 cicecore/cicedyn/dynamics/ice_transport_remap.F90
+2 −1 cicecore/cicedyn/general/ice_flux.F90
+9 −1 cicecore/cicedyn/general/ice_forcing.F90
+247 −56 cicecore/cicedyn/general/ice_init.F90
+2 −0 cicecore/cicedyn/general/ice_state.F90
+27 −18 cicecore/cicedyn/infrastructure/comm/mpi/ice_global_reductions.F90
+27 −18 cicecore/cicedyn/infrastructure/comm/serial/ice_global_reductions.F90
+27 −27 cicecore/cicedyn/infrastructure/ice_blocks.F90
+45 −34 cicecore/cicedyn/infrastructure/ice_domain.F90
+50 −141 cicecore/cicedyn/infrastructure/ice_grid.F90
+2 −1 cicecore/cicedyn/infrastructure/ice_memusage.F90
+636 −655 cicecore/cicedyn/infrastructure/ice_read_write.F90
+1 −1 cicecore/cicedyn/infrastructure/ice_restoring.F90
+1 −0 cicecore/cicedyn/infrastructure/io/io_binary/ice_history_write.F90
+12 −12 cicecore/cicedyn/infrastructure/io/io_binary/ice_restart.F90
+1,032 −1,061 cicecore/cicedyn/infrastructure/io/io_netcdf/ice_history_write.F90
+256 −207 cicecore/cicedyn/infrastructure/io/io_netcdf/ice_restart.F90
+656 −535 cicecore/cicedyn/infrastructure/io/io_pio2/ice_history_write.F90
+156 −65 cicecore/cicedyn/infrastructure/io/io_pio2/ice_pio.F90
+589 −541 cicecore/cicedyn/infrastructure/io/io_pio2/ice_restart.F90
+32 −1 cicecore/drivers/nuopc/cmeps/ice_comp_nuopc.F90
+44 −34 cicecore/drivers/nuopc/cmeps/ice_import_export.F90
+1 −7 cicecore/drivers/nuopc/cmeps/ice_mesh_mod.F90
+1 −1 cicecore/drivers/standalone/cice/CICE_InitMod.F90
+9 −2 cicecore/shared/ice_restart_shared.F90
+13 −0 configuration/scripts/ice_in
+6 −1 configuration/scripts/machines/Macros.conda_macos
+2 −0 configuration/scripts/machines/env.derecho_cray
+2 −0 configuration/scripts/machines/env.derecho_gnu
+2 −0 configuration/scripts/machines/env.derecho_intel
+2 −0 configuration/scripts/machines/env.derecho_intelclassic
+2 −0 configuration/scripts/machines/env.derecho_inteloneapi
+2 −0 configuration/scripts/machines/env.derecho_nvhpc
+1 −0 configuration/scripts/machines/environment.yml
+1 −0 configuration/scripts/options/set_env.iopio1
+0 −1 configuration/scripts/options/set_env.iopio1p
+0 −1 configuration/scripts/options/set_env.iopio2p
+1 −0 configuration/scripts/options/set_nml.histall
+1 −0 configuration/scripts/options/set_nml.histdbg
+2 −0 configuration/scripts/options/set_nml.iobinary
+2 −0 configuration/scripts/options/set_nml.iocdf1
+2 −0 configuration/scripts/options/set_nml.iocdf2
+2 −0 configuration/scripts/options/set_nml.iocdf5
+2 −0 configuration/scripts/options/set_nml.iohdf5
+4 −0 configuration/scripts/options/set_nml.iohdf5opts
+0 −2 configuration/scripts/options/set_nml.iopio1
+0 −2 configuration/scripts/options/set_nml.iopio1p
+0 −2 configuration/scripts/options/set_nml.iopio2
+0 −2 configuration/scripts/options/set_nml.iopio2p
+10 −0 configuration/scripts/options/set_nml.iopioopts
+2 −0 configuration/scripts/options/set_nml.iopnetcdf1
+2 −0 configuration/scripts/options/set_nml.iopnetcdf2
+2 −0 configuration/scripts/options/set_nml.iopnetcdf5
+3 −3 configuration/scripts/tests/gridsys_suite.ts
+41 −67 configuration/scripts/tests/io_suite.ts
+13 −0 doc/source/cice_index.rst
+8 −2 doc/source/developer_guide/dg_about.rst
+3 −1 doc/source/developer_guide/dg_infra.rst
+51 −14 doc/source/user_guide/ug_case_settings.rst
+97 −29 doc/source/user_guide/ug_implementation.rst
+65 −18 doc/source/user_guide/ug_running.rst
+5 −0 doc/source/user_guide/ug_testing.rst
2 changes: 1 addition & 1 deletion WW3
Submodule WW3 updated 39 files
+13 −5 .github/workflows/intel.yml
+38 −11 model/inp/ww3_grid.inp
+1 −1 model/inp/ww3_ounf.inp
+4 −3 model/inp/ww3_shel.inp
+24 −52 model/src/w3adatmd.F90
+11 −0 model/src/w3gdatmd.F90
+17 −1 model/src/w3gridmd.F90
+6 −15 model/src/w3idatmd.F90
+21 −12 model/src/w3initmd.F90
+71 −172 model/src/w3iogomd.F90
+3 −6 model/src/w3iogoncdmd.F90
+10 −0 model/src/w3iogrmd.F90
+18 −0 model/src/w3iorsmd.F90
+2 −4 model/src/w3odatmd.F90
+25 −0 model/src/w3ounfmetamd.F90
+12 −2 model/src/wav_comp_nuopc.F90
+4 −3 model/src/wav_grdout.F90
+46 −10 model/src/wav_import_export.F90
+18 −1 model/src/ww3_ounf.F90
+52 −1 model/src/ww3_outf.F90
+121 −110 regtests/bin/matrix.base
+7 −6 regtests/bin/matrix_cmake_datarmor
+9 −8 regtests/bin/matrix_cmake_milhydro
+1 −0 regtests/bin/matrix_cmake_ncep
+6 −5 regtests/bin/matrix_cmake_ukmo_cray
+58 −0 regtests/ww3_tp2.22/info
+1 −0 regtests/ww3_tp2.22/input/switch
+6 −0 regtests/ww3_tp2.22/input/track_i.ww3
+33 −0 regtests/ww3_tp2.22/input/ww3_grid.inp
+33 −0 regtests/ww3_tp2.22/input/ww3_grid_sdtail.inp
+43 −0 regtests/ww3_tp2.22/input/ww3_ounf.inp
+119 −0 regtests/ww3_tp2.22/input/ww3_ounp.inp
+10 −0 regtests/ww3_tp2.22/input/ww3_outf.inp
+11 −0 regtests/ww3_tp2.22/input/ww3_outp_spec.inp
+10 −0 regtests/ww3_tp2.22/input/ww3_outp_tab51.inp
+10 −0 regtests/ww3_tp2.22/input/ww3_outp_tab52.inp
+10 −0 regtests/ww3_tp2.22/input/ww3_outp_tab53.inp
+42 −0 regtests/ww3_tp2.22/input/ww3_shel.inp
+5 −0 regtests/ww3_tp2.22/input/ww3_strt.inp
4 changes: 2 additions & 2 deletions tests/parm/ufs.configure.s2scatchem.IN
Original file line number Diff line number Diff line change
Expand Up @@ -91,15 +91,15 @@ MED_attributes::
ICE_model = @[ice_model]
OCN_model = @[ocn_model]
coupling_mode = @[CPLMODE]
history_tile_atm = @[ATMTILESIZE]
pio_rearranger = @[pio_rearranger]
ocean_albedo_limit = @[ocean_albedo_limit]
::

ALLCOMP_attributes::
ScalarFieldCount = 2
ScalarFieldCount = 3
ScalarFieldIdxGridNX = 1
ScalarFieldIdxGridNY = 2
ScalarFieldIdxGridNTile = 3
ScalarFieldName = cpl_scalars
start_type = @[RUNTYPE]
restart_dir = @[CMEPS_RESTART_DIR]
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4 changes: 2 additions & 2 deletions tests/parm/ufs.configure.s2scatchem_esmf.IN
Original file line number Diff line number Diff line change
Expand Up @@ -95,15 +95,15 @@ MED_attributes::
ICE_model = @[ice_model]
OCN_model = @[ocn_model]
coupling_mode = @[CPLMODE]
history_tile_atm = @[ATMTILESIZE]
pio_rearranger = @[pio_rearranger]
ocean_albedo_limit = @[ocean_albedo_limit]
::

ALLCOMP_attributes::
ScalarFieldCount = 2
ScalarFieldCount = 3
ScalarFieldIdxGridNX = 1
ScalarFieldIdxGridNY = 2
ScalarFieldIdxGridNTile = 3
ScalarFieldName = cpl_scalars
start_type = @[RUNTYPE]
restart_dir = @[CMEPS_RESTART_DIR]
Expand Down
4 changes: 2 additions & 2 deletions tests/parm/ufs.configure.s2swcatchem.IN
Original file line number Diff line number Diff line change
Expand Up @@ -108,15 +108,15 @@ MED_attributes::
OCN_model = @[ocn_model]
WAV_model = @[wav_model]
coupling_mode = @[CPLMODE]
history_tile_atm = @[ATMTILESIZE]
pio_rearranger = @[pio_rearranger]
ocean_albedo_limit = @[ocean_albedo_limit]
::

ALLCOMP_attributes::
ScalarFieldCount = 2
ScalarFieldCount = 3
ScalarFieldIdxGridNX = 1
ScalarFieldIdxGridNY = 2
ScalarFieldIdxGridNTile = 3
ScalarFieldName = cpl_scalars
start_type = @[RUNTYPE]
restart_dir = @[CMEPS_RESTART_DIR]
Expand Down
4 changes: 2 additions & 2 deletions tests/parm/ufs.configure.s2swcatchem_esmf.IN
Original file line number Diff line number Diff line change
Expand Up @@ -112,14 +112,14 @@ MED_attributes::
OCN_model = @[ocn_model]
WAV_model = @[wav_model]
coupling_mode = @[CPLMODE]
history_tile_atm = @[ATMTILESIZE]
pio_rearranger = @[pio_rearranger]
ocean_albedo_limit = @[ocean_albedo_limit]
::
ALLCOMP_attributes::
ScalarFieldCount = 2
ScalarFieldCount = 3
ScalarFieldIdxGridNX = 1
ScalarFieldIdxGridNY = 2
ScalarFieldIdxGridNTile = 3
ScalarFieldName = cpl_scalars
start_type = @[RUNTYPE]
restart_dir = @[CMEPS_RESTART_DIR]
Expand Down

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