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29 Open 14 Closed
29 Open 14 Closed
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Issues list

Can i nordmalise without having commvon sample between two repeats
#43 opened Mar 25, 2024 by ucbtsh6
The covariates are confounded
#42 opened Mar 25, 2024 by SimonSchlumbohm
3
Batch effect present for some biotypes after running CombatSeq
#41 opened Jan 26, 2024 by kvn95ss
no data rows with required number of counts
#40 opened Nov 30, 2023 by Chenjlin28
A strange problem
#39 opened Aug 25, 2023 by zonzero
1
Plus one (well, I mean more than one) samples
#38 opened Aug 16, 2023 by woodyNsinbad
ComBat-seq doesn't support 1 sample per batch yet
#37 opened May 27, 2023 by jianwu1
Combat-seq, Pseudoaligners and DESeq2
#36 opened Apr 11, 2023 by pintoa1-mskcc
running combat-seq with DESeq2
#35 opened Mar 11, 2023 by Mercilena
How to adjust by multiple variables using ComBat-Seq?
#33 opened Jul 26, 2022 by evaesquinas
3
Error in order(y) : unimplemented type 'list' in 'orderVector1'
#32 opened Jul 1, 2022 by dea-jenaer
Common not tagwise dispersion used when one level of covariate - Code error?
#31 opened Jun 1, 2022 by reidbm
Keep getting the error that rows do not match
#30 opened Dec 21, 2021 by sameet-sema4
1
ComBat_seq took a very long time
#29 opened Dec 1, 2021 by rongwong1119
11
Can I Use ComBat-Seq to adjust multigroups RNAseq?
#28 opened Aug 11, 2021 by yirenheihei
Using ComBat-Seq to adjust for batch effect/ colony ID
#27 opened Jul 6, 2021 by mastoldt
Multiple corrections
#26 opened Jun 15, 2021 by tea-radut
Error in qr.default(design) : NA/NaN/Inf in foreign function call (arg 1)
#25 opened Jun 7, 2021 by chiwwong
3
Run combat-seq on continues variable
#24 opened Jun 1, 2021 by jeppeseverens
Using ComBat-Seq over RSEM estimated counts
#23 opened Apr 27, 2021 by ali-kishk
1
different output after changing group parameter
#22 opened Apr 9, 2021 by mikagm
the vignette returns a matrix | array, real data returns a list
#21 opened Mar 18, 2021 by AGordonRobertson
1
ComBat-Seq correction creating very large count values--cannot feed into DESeq2
#20 opened Mar 16, 2021 by cdharshika
11
Implementation with DESeq2 > "invalid class “DESeqDataSet” object: the count data is not in integer mode"
#19 opened Feb 15, 2021 by samuellup
5
ComBat-seq + DESeq2 / WGCNA Or DESeq2 (batch as covariate) / ComBat + WGCNA
#18 opened Jan 31, 2021 by sharvarinarendra
9
ProTip! Exclude everything labeled bug with -label:bug.