CancerSubtypes: an R/Bioconductor package for molecular cancer subtype identification, validation, and visualization
The R/Bioconductor package CancerSubtypes integrates the current common computational biology methods for cancer subtypes identification and provides a standardized framework for cancer subtype analysis based multi-omics data, such as gene expression, miRNA expression, DNA methylation and others.
devtools::install_github("xtsvm/CancerSubtypes")
Tutorial and examples can be found here.
Please cite the following article when using CancerSubtypes:
Xu, T. et al. CancerSubtypes: an R/Bioconductor package for molecular cancer subtype identification, validation, and visualization. Bioinformatics (2017) doi:10.1093/bioinformatics/btx378.