code for mouse BAT scRNA-seq and Ligand-Receptor interaction analysis
mouseBAT_scRNA_py.ipynb: scRNA-seq data analysis by scanpy [Python]
cellchat_all.R: CellChat predicted ligand-receptor interactions by using all cells [R]
cellchat_allcond.R: CellChat predicted ligand-receptor interactions for each condition [R]
CellChat_downstream_R.ipynb: comprehensive downstream downstream analyses for ligand-receptor interactions in mouse brown fat [Python]
reproduce_elife_analysis_r.ipynb: reanalysis of published scRNA-seq data from "Deconstructing cold-induced brown adipocyte neogenesis in mice", published by Burl, et al. in eLife, 2022.