now properly cache biocversion (#122) #577
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| name: R | |
| on: | |
| pull_request: | |
| branches: | |
| - "*" | |
| push: | |
| branches: | |
| - "master" | |
| env: | |
| cache-version: "cache-v1" | |
| jobs: | |
| build: | |
| strategy: | |
| max-parallel: 5 | |
| matrix: | |
| config: | |
| - { os: ubuntu-latest } | |
| - { os: windows-latest } | |
| - { os: macos-latest } | |
| runs-on: ${{ matrix.config.os }} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup R and Bioconductor | |
| uses: grimbough/bioc-actions/setup-bioc@v1 | |
| id: install-r | |
| with: | |
| bioc-version: release | |
| - name: Get R version | |
| id: R | |
| run: | | |
| R --version > VERSION | |
| echo "version=$(head -1 VERSION | awk '{print $3}')" >> $GITHUB_OUTPUT | |
| shell: bash -l {0} | |
| - name: Get Bioconductor version | |
| id: BIOC | |
| run: | | |
| echo "version=$R_BIOC_VERSION" >> $GITHUB_OUTPUT | |
| shell: bash -l {0} | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Cache R packages | |
| uses: actions/cache@v4 | |
| with: | |
| path: /home/runner/work/_temp/Library | |
| key: ${{ env.cache-version }}-${{ matrix.config.os }}-biocversion-${{ steps.BIOC.outputs.version}}-r-${{ steps.R.outputs.version}}-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ env.cache-version }}-${{ matrix.config.os }}-biocversion-${{ steps.BIOC.outputs.version}}-r-${{ steps.R.outputs.version}}- | |
| - name: Install and check | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: | | |
| any::rcmdcheck | |
| covr | |
| pkgdown | |
| needs: check | |
| - name: Test coverage | |
| if: github.actor == 'zktuong' && matrix.config.os == 'ubuntu-latest' | |
| run: | | |
| Rscript -e 'covr::codecov(token = "${{ secrets.CODECOV_TOKEN }}")' | |
| shell: bash -l {0} |