Fix search pattern (#103) #98
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on: | |
push: | |
branches: | |
- "master" | |
pull_request: | |
branches: | |
- "*" | |
name: vignette | |
jobs: | |
vignette: | |
defaults: | |
run: | |
shell: bash -l {0} | |
strategy: | |
matrix: | |
config: | |
- { os: macos-latest } | |
runs-on: ${{ matrix.config.os }} | |
env: | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- uses: actions/checkout@v3 | |
- uses: r-lib/actions/setup-r@v2 | |
id: install-r | |
- uses: r-lib/actions/setup-pandoc@v2 | |
- id: bioc | |
name: Check bioc version | |
run: | | |
echo "##[set-output name=mainbiocversion;]$(Rscript -e 'cat(unlist(tools:::.BioC_version_associated_with_R_version()))' | awk '{print $1}')" | |
echo "##[set-output name=subbiocversion;]$(Rscript -e 'cat(unlist(tools:::.BioC_version_associated_with_R_version()))' | awk '{print $2}')" | |
echo "##[set-output name=biocversion;]$(Rscript -e 'cat(as.character(tools:::.BioC_version_associated_with_R_version()))' | awk '{print $1}')" | |
shell: bash -l {0} | |
- name: Install pak and query dependencies | |
run: | | |
install.packages("pak", repos = "https://r-lib.github.io/p/pak/dev/") | |
saveRDS(pak::pkg_deps("local::.", dependencies = TRUE), ".github/r-depends.rds") | |
shell: Rscript {0} | |
- name: Cache R packages | |
uses: actions/cache@v2 | |
with: | |
path: | | |
${{ env.R_LIBS_USER }} | |
!${{ env.R_LIBS_USER }}/pak | |
key: ${{ env.cache-version }}-${{ matrix.config.os }}-biocversion-RELEASE_${{ steps.bioc.outputs.mainbiocversion}}_${{ steps.bioc.outputs.subbiocversion}}-r-${{ matrix.config.r-version}}-${{ hashFiles('.github/depends.Rds') }} | |
restore-keys: ${{ env.cache-version }}-${{ matrix.config.os }}-biocversion-RELEASE_${{ steps.bioc.outputs.mainbiocversion}}_${{ steps.bioc.outputs.subbiocversion}}-r-${{ matrix.config.r-version}}- | |
- name: Install dependencies | |
run: | | |
pak::local_install_dev_deps(upgrade = TRUE, dependencies = c("all", "Config/Needs/website")) | |
pak::pkg_install("pkgdown") | |
shell: Rscript {0} | |
- name: Install package | |
run: R CMD INSTALL . | |
- name: Build and deploy pkgdown site | |
run: | | |
git config --local user.name "$GITHUB_ACTOR" | |
git config --local user.email "[email protected]" | |
Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)' | |
shell: bash -l {0} |