env

environment.yaml

@@ -4,399 +4,21 @@ channels:
   - bioconda
   - defaults
 dependencies:
-  - _libgcc_mutex
-  - _openmp_mutex
-  - _py-xgboost-mutex
-  - aioeasywebdav
-  - aiohttp
-  - alsa-lib
-  - anaconda-client
-  - anndata
-  - appdirs
-  - argcomplete
-  - argh
-  - asciitree
-  - aspera-cli
-  - astroid
-  - async-timeout
-  - atactk
-  - attrs
-  - backcall
-  - bcrypt
   - bedtools
-  - binutils_impl_linux-64
-  - binutils_linux-64
-  - biopython
-  - bleach
-  - blosc
-  - bokeh
-  - boost-cpp
-  - boruta_py
-  - boto3
-  - botocore
-  - brotlipy
-  - bwa
-  - bwidget
-  - bx-python
-  - bzip2
-  - ca-certificates
-  - cachetools
-  - cairo
-  - certifi
-  - cffi
-  - chardet
-  - click
-  - cloudpickle
-  - clyent
-  - colorcet
-  - colormath
-  - conda
-  - conda-package-handling
-  - configargparse
-  - cooler
-  - cryptography
-  - curl
-  - cycler
-  - cython
-  - cytoolz
-  - dask
-  - dask-core
-  - datrie
-  - dbus
-  - decorator
   - deeptools
-  - deeptoolsintervals
-  - defusedxml
-  - dill
-  - distributed
-  - docutils
-  - dropbox
-  - entrypoints
-  - expat
-  - fastp
-  - fastqc
-  - fftw
-  - filechunkio
-  - flask
-  - font-ttf-dejavu-sans-mono
-  - font-ttf-inconsolata
-  - font-ttf-source-code-pro
-  - font-ttf-ubuntu
-  - fontconfig
-  - fonts-conda-forge
-  - freetype
-  - fribidi
-  - fsspec
-  - ftputil
-  - future
-  - gcc_impl_linux-64
-  - gcc_linux-64
-  - gdk-pixbuf
-  - get_version
-  - gettext
-  - gffutils
-  - gfortran_impl_linux-64
-  - gfortran_linux-64
-  - ghostscript
-  - giflib
-  - gitdb
-  - gitpython
-  - glib
-  - gobject-introspection
-  - google-api-core
-  - google-auth
-  - google-cloud-core
-  - google-cloud-storage
-  - google-resumable-media
-  - googleapis-common-protos
-  - graphite2
-  - graphviz
   - gsl
-  - gst-plugins-base
-  - gstreamer
-  - gxx_impl_linux-64
-  - gxx_linux-64
-  - h5py
-  - harfbuzz
-  - hdf5
-  - heapdict
-  - hicmatrix
-  - htslib
-  - icu
-  - idna
-  - imagemagick
-  - importlib-metadata
-  - importlib_metadata
-  - intermine
-  - intervaltree
-  - ipykernel
   - ipython
-  - ipython_genutils
-  - ipywidgets
-  - isort
-  - itsdangerous
-  - jbig
-  - jedi
-  - jinja2
-  - jmespath
-  - joblib
-  - jpeg
-  - json5
-  - jsonschema
-  - jupyter
-  - jupyter_client
-  - jupyter_console
-  - jupyter_core
-  - jupyterlab
-  - jupyterlab_server
-  - kiwisolver
-  - krb5
-  - lazy-object-proxy
-  - lcms2
-  - ld_impl_linux-64
-  - legacy-api-wrap
-  - libblas
-  - libcblas
-  - libclang
-  - libcroco
-  - libcurl
-  - libdeflate
-  - libedit
-  - libffi
-  - libgcc-ng
-  - libgfortran-ng
-  - libgomp
-  - libiconv
-  - liblapack
-  - libllvm8
-  - libllvm9
-  - libopenblas
-  - libpng
-  - libprotobuf
-  - librsvg
-  - libsodium
-  - libssh2
-  - libstdcxx-ng
-  - libtiff
-  - libtool
-  - libuuid
-  - libwebp
-  - libwebp-base
-  - libxcb
-  - libxgboost
-  - libxkbcommon
-  - libxml2
-  - libxslt
-  - llvmlite
-  - locket
-  - lz4-c
-  - lzo
-  - lzstring
-  - make
-  - markdown
-  - markupsafe
   - matplotlib
-  - matplotlib-base
-  - matplotlib-venn
-  - mccabe
-  - mistune
-  - mock
-  - msgpack-python
-  - multidict
-  - multiprocess
-  - multiqc
-  - natsort
-  - nbconvert
-  - nbformat
-  - ncbi-ngs-sdk
-  - ncurses
-  - networkx
-  - notebook
-  - nspr
-  - nss
-  - numba
-  - numexpr
   - numpy
-  - olefile
-  - openblas
-  - openjdk
-  - openjpeg
-  - openssl
-  - packaging
-  - pairix
   - pandas
-  - pandoc
-  - pandocfilters
-  - pango
-  - param
-  - paramiko
-  - parso
-  - partd
-  - patsy
-  - pcre
-  - pcre2
-  - perl
-  - perl-app-cpanminus
-  - perl-business-isbn
-  - perl-business-isbn-data
-  - perl-carp
-  - perl-constant
-  - perl-data-dumper
-  - perl-encode
-  - perl-exporter
-  - perl-extutils-makemaker
-  - perl-file-path
-  - perl-file-temp
-  - perl-mime-base64
-  - perl-parent
-  - perl-uri
-  - perl-xml-libxml
-  - perl-xml-namespacesupport
-  - perl-xml-sax
-  - perl-xml-sax-base
-  - perl-xsloader
-  - pexpect
-  - pickleshare
-  - pillow
-  - pip
-  - pixman
-  - pkg-config
-  - plink
-  - plotly
-  - prettytable
-  - prometheus_client
-  - prompt-toolkit
-  - prompt_toolkit
-  - protobuf
-  - psutil
-  - pthread-stubs
-  - ptyprocess
-  - py-xgboost
-  - py2bit
-  - pyasn1
-  - pyasn1-modules
-  - pybigwig
-  - pycairo
-  - pycosat
-  - pycparser
-  - pyct
-  - pyct-core
-  - pyfaidx
-  - pygenometracks
-  - pygments
-  - pygraphviz
-  - pylint
-  - pynacl
-  - pyopenssl
-  - pyparsing
-  - pyqt
-  - pyrsistent
   - pysam
-  - pysftp
-  - pysocks
-  - pytables
   - python
-  - python-dateutil
-  - python-irodsclient
-  - python-levenshtein
-  - python-lzo
-  - python-pdfkit
-  - python_abi
-  - pytz
-  - pyyaml
-  - pyzmq
-  - qt
-  - qtconsole
-  - qtpy
-  - ratelimiter
-  - readline
-  - requests
-  - retrying
-  - rise
-  - rsa
-  - ruamel_yaml
-  - s3transfer
-  - salmon
-  - samblaster
   - samtools
-  - scanpy
   - scikit-learn
   - scipy
   - seaborn
-  - sed
-  - send2trash
-  - setuptools
-  - setuptools-scm
-  - setuptools_scm
-  - sexpdata
-  - shapeit4
-  - simplejson
-  - six
-  - smmap
   - snakemake
-  - snakemake-minimal
-  - sortedcontainers
-  - spectra
-  - sqlite
-  - sra-tools
-  - star
-  - statsmodels
-  - sysroot_linux-64
-  - tbb
-  - tblib
-  - terminado
-  - testpath
-  - tk
-  - tktable
-  - toml
-  - toolz
-  - toposort
-  - tornado
   - tqdm
-  - traitlets
-  - typed-ast
-  - typing_extensions
-  - umap-learn
-  - urllib3
-  - vcftools
-  - wcwidth
-  - webencodings
-  - werkzeug
-  - wheel
-  - widgetsnbextension
-  - wkhtmltopdf
-  - wrapt
-  - xgboost
-  - xlrd
-  - xlwt
-  - xmlrunner
-  - xmltodict
-  - xorg-fixesproto
-  - xorg-inputproto
-  - xorg-kbproto
-  - xorg-libice
-  - xorg-libsm
-  - xorg-libx11
-  - xorg-libxau
-  - xorg-libxdmcp
-  - xorg-libxext
-  - xorg-libxfixes
-  - xorg-libxi
-  - xorg-libxpm
-  - xorg-libxrender
-  - xorg-libxt
-  - xorg-libxtst
-  - xorg-recordproto
-  - xorg-renderproto
-  - xorg-xextproto
-  - xorg-xproto
-  - xz
   - yaml
-  - yarl
-  - zeromq
-  - zict
-  - zipp
-  - zlib
-  - zstd