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  1. 16S_ONT_preprocessreads 16S_ONT_preprocessreads Public

    From Nanopore FAST5 raw data to pre-processed FASTQ files. Includes high-accuracy basecalling, quality filtering, demultiplexing, chimera removal, trimming and length filtering.

    Shell

  2. emu_output_formatteR emu_output_formatteR Public

    R

  3. emu_tax_class emu_tax_class Public

    Commands to use emu taxonomic classifier on preprocessed Nanopore FASTQ reads

    Shell

  4. 16S_illumina_preprocessreads 16S_illumina_preprocessreads Public

    From Illumina raw PE reads (16S seq) to polished FASTQ files, ready to undergo taxonomical classification.

    Shell

  5. docker_rstudio docker_rstudio Public

    R