pybnbowtie is a library for mapping bow-tie analysis to Bayesian networks.
pybnbowtie has the following dependencies:
- pgmpy (with its own dependencies)
- treelib
- matploblib
Enable usage of jupyter (see also notes below)
- ipykernel
- networkx
- numpy
- scipy
- pandas
- pyparsing
- torch
- statsmodels
- tqdm
- joblib
- pgmpy
- treelib
And perhaps for jupyter also
- ipykernel
- matplotlib
To install pybnbowtie from source code:
git clone https://github.com/zurheide/pybnbowtie.git
cd pybnbowtie
pip install -r requirements.txt
python setup.py install
If pipenv is used the environment has to be installed in jupyter. Howto was found here: https://stackoverflow.com/questions/47295871/is-there-a-way-to-use-pipenv-with-jupyter-notebook
run python -m ipykernel install --user --name=my-virtualenv-name before usage of jupyter:
$ pipenv shell
$ python -m ipykernel install --user --name=my-virtualenv-name
$ jupyter notebook
Afterwards select my-virtualenv-name kernel in jupyter.