Update py-modelrunner dependency

zwicker-group · Apr 14, 2024 · a4c8c8f · a4c8c8f
1 parent de66c7e
commit a4c8c8f
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Showing 6 changed files with 7 additions and 7 deletions.
diff --git a/docs/requirements.txt b/docs/requirements.txt
@@ -2,7 +2,7 @@
 h5py>=2.10
 pandas>=2
 Pillow>=7.0
-py-modelrunner>=0.17
+py-modelrunner>=0.17.1
 Sphinx>=4
 sphinx-autodoc-annotation>=1.0
 sphinx-gallery>=0.6

diff --git a/docs/source/_static/requirements_optional.csv b/docs/source/_static/requirements_optional.csv
@@ -6,6 +6,6 @@ mpi4py,3,Parallel processing using MPI
 napari,0.4.8,Displaying images interactively
 numba-mpi,0.22,Parallel processing using MPI+numba
 pandas,2,Handling tabular data
-py-modelrunner,0.17,Running simulations and handling I/O
+py-modelrunner,0.17.1,Running simulations and handling I/O
 pyfftw,0.12,Faster Fourier transforms
 rocket-fft,0.2.4,Numba-compiled fast Fourier transforms
diff --git a/pde/tools/resources/requirements_full.txt b/pde/tools/resources/requirements_full.txt
@@ -5,7 +5,7 @@ matplotlib>=3.1
 numba>=0.59
 numpy>=1.22
 pandas>=2
-py-modelrunner>=0.17
+py-modelrunner>=0.17.1
 rocket-fft>=0.2.4
 scipy>=1.10
 sympy>=1.9

diff --git a/scripts/create_requirements.py b/scripts/create_requirements.py
@@ -109,7 +109,7 @@ def line(self, relation: str = ">=") -> str:
     ),
     Requirement(
         name="py-modelrunner",
-        version_min="0.17",
+        version_min="0.17.1",
         usage="Running simulations and handling I/O",
         collections={"full", "docs"},
     ),

diff --git a/tests/requirements_full.txt b/tests/requirements_full.txt
@@ -5,7 +5,7 @@ matplotlib>=3.1
 numba>=0.59
 numpy>=1.22
 pandas>=2
-py-modelrunner>=0.17
+py-modelrunner>=0.17.1
 rocket-fft>=0.2.4
 scipy>=1.10
 sympy>=1.9

diff --git a/tests/test_integration.py b/tests/test_integration.py
@@ -155,7 +155,7 @@ def test_modelrunner_storage_one(tmp_path, capsys):
 
     # read result
     with mr.open_storage(output, mode="read") as storage_obj:
-        np.testing.assert_allclose(storage_obj["trajectory"].times, [0, 1])
+        np.testing.assert_allclose(storage_obj["data/trajectory"].times, [0, 1])
     result = mr.Result.from_file(output)
     assert isinstance(result.data["field"], ScalarField)
 
@@ -193,7 +193,7 @@ def test_modelrunner_storage_many(tmp_path):
     for path in tmp_path.iterdir():
         if path.is_file() and not path.name.endswith("txt"):
             with mr.open_storage(path) as storage:
-                assert "trajectory" in storage.keys()
+                assert "trajectory" in storage["data"].keys()
                 assert "result" in storage.keys()
 
     # delete temporary files