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45 changes: 45 additions & 0 deletions
45
src/main/java/ca/gc/aafc/seqdb/api/dto/MetagenomicsBatchDto.java
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,45 @@ | ||
| package ca.gc.aafc.seqdb.api.dto; | ||
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| import ca.gc.aafc.dina.dto.ExternalRelationDto; | ||
| import ca.gc.aafc.dina.dto.RelatedEntity; | ||
| import ca.gc.aafc.dina.repository.meta.JsonApiExternalRelation; | ||
| import ca.gc.aafc.seqdb.api.entities.MetagenomicsBatch; | ||
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| import io.crnk.core.resource.annotations.JsonApiId; | ||
| import io.crnk.core.resource.annotations.JsonApiRelation; | ||
| import io.crnk.core.resource.annotations.JsonApiResource; | ||
| import java.time.OffsetDateTime; | ||
| import java.util.UUID; | ||
| import lombok.AllArgsConstructor; | ||
| import lombok.Builder; | ||
| import lombok.Data; | ||
| import lombok.NoArgsConstructor; | ||
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| @Builder | ||
| @Data | ||
| @NoArgsConstructor | ||
| @AllArgsConstructor | ||
| @JsonApiResource(type = MetagenomicsBatchDto.TYPENAME) | ||
| @RelatedEntity(MetagenomicsBatch.class) | ||
| public class MetagenomicsBatchDto { | ||
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| public static final String TYPENAME = "metagenomics-batch"; | ||
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| @JsonApiId | ||
| private UUID uuid; | ||
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| private String createdBy; | ||
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| private OffsetDateTime createdOn; | ||
| private String group; | ||
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| private String name; | ||
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| @JsonApiExternalRelation(type = "protocol") | ||
| @JsonApiRelation | ||
| private ExternalRelationDto protocol; | ||
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| @JsonApiRelation | ||
| private IndexSetDto indexSet; | ||
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| } |
53 changes: 53 additions & 0 deletions
53
src/main/java/ca/gc/aafc/seqdb/api/dto/MetagenomicsBatchItemDto.java
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,53 @@ | ||
| package ca.gc.aafc.seqdb.api.dto; | ||
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| import ca.gc.aafc.dina.dto.RelatedEntity; | ||
| import ca.gc.aafc.seqdb.api.dto.pcr.PcrBatchItemDto; | ||
| import ca.gc.aafc.seqdb.api.entities.MetagenomicsBatchItem; | ||
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| import io.crnk.core.resource.annotations.JsonApiId; | ||
| import io.crnk.core.resource.annotations.JsonApiRelation; | ||
| import io.crnk.core.resource.annotations.JsonApiResource; | ||
| import java.time.OffsetDateTime; | ||
| import java.util.UUID; | ||
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| import org.javers.core.metamodel.annotation.ShallowReference; | ||
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| import lombok.AllArgsConstructor; | ||
| import lombok.Builder; | ||
| import lombok.Data; | ||
| import lombok.NoArgsConstructor; | ||
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| @Builder | ||
| @Data | ||
| @NoArgsConstructor | ||
| @AllArgsConstructor | ||
| @JsonApiResource(type = MetagenomicsBatchItemDto.TYPENAME) | ||
| @RelatedEntity(MetagenomicsBatchItem.class) | ||
| public class MetagenomicsBatchItemDto { | ||
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| public static final String TYPENAME = "metagenomics-batch-item"; | ||
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| @JsonApiId | ||
| private UUID uuid; | ||
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| private String createdBy; | ||
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| private OffsetDateTime createdOn; | ||
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| @JsonApiRelation | ||
| private MetagenomicsBatchDto metagenomicsBatch; | ||
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| @JsonApiRelation | ||
| private PcrBatchItemDto pcrBatchItem; | ||
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| @ShallowReference | ||
| @JsonApiRelation | ||
| private MolecularAnalysisRunItemDto molecularAnalysisRunItem; | ||
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| @JsonApiRelation | ||
| private NgsIndexDto indexI5; | ||
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| @JsonApiRelation | ||
| private NgsIndexDto indexI7; | ||
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| } |
48 changes: 48 additions & 0 deletions
48
src/main/java/ca/gc/aafc/seqdb/api/dto/QualityControlDto.java
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,48 @@ | ||
| package ca.gc.aafc.seqdb.api.dto; | ||
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| import io.crnk.core.resource.annotations.JsonApiId; | ||
| import io.crnk.core.resource.annotations.JsonApiRelation; | ||
| import io.crnk.core.resource.annotations.JsonApiResource; | ||
| import java.time.OffsetDateTime; | ||
| import java.util.UUID; | ||
| import lombok.AllArgsConstructor; | ||
| import lombok.Builder; | ||
| import lombok.Data; | ||
| import lombok.NoArgsConstructor; | ||
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| import org.javers.core.metamodel.annotation.Id; | ||
| import org.javers.core.metamodel.annotation.PropertyName; | ||
| import org.javers.core.metamodel.annotation.TypeName; | ||
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| import ca.gc.aafc.dina.dto.RelatedEntity; | ||
| import ca.gc.aafc.seqdb.api.entities.QualityControl; | ||
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| @Builder | ||
| @Data | ||
| @NoArgsConstructor | ||
| @AllArgsConstructor | ||
| @JsonApiResource(type = QualityControlDto.TYPENAME) | ||
| @TypeName(QualityControlDto.TYPENAME) | ||
| @RelatedEntity(QualityControl.class) | ||
| public class QualityControlDto { | ||
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| public static final String TYPENAME = "quality-control"; | ||
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| @JsonApiId | ||
| @Id | ||
| @PropertyName("id") | ||
| private UUID uuid; | ||
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| private String createdBy; | ||
| private OffsetDateTime createdOn; | ||
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| private String group; | ||
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| private String name; | ||
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| private String qcType; | ||
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| @JsonApiRelation | ||
| private MolecularAnalysisRunItemDto molecularAnalysisRunItem; | ||
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| } |
41 changes: 41 additions & 0 deletions
41
src/main/java/ca/gc/aafc/seqdb/api/dto/SequenceManagedAttributeDto.java
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,41 @@ | ||
| package ca.gc.aafc.seqdb.api.dto; | ||
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| import ca.gc.aafc.dina.dto.RelatedEntity; | ||
| import ca.gc.aafc.dina.i18n.MultilingualDescription; | ||
| import ca.gc.aafc.dina.vocabulary.TypedVocabularyElement; | ||
| import ca.gc.aafc.seqdb.api.entities.SequenceManagedAttribute; | ||
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| import io.crnk.core.resource.annotations.JsonApiId; | ||
| import io.crnk.core.resource.annotations.JsonApiResource; | ||
| import lombok.Data; | ||
|
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| import java.time.OffsetDateTime; | ||
| import java.util.UUID; | ||
|
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| import org.javers.core.metamodel.annotation.Id; | ||
| import org.javers.core.metamodel.annotation.PropertyName; | ||
| import org.javers.core.metamodel.annotation.TypeName; | ||
|
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| @RelatedEntity(SequenceManagedAttribute.class) | ||
| @Data | ||
| @JsonApiResource(type = SequenceManagedAttributeDto.TYPENAME) | ||
| @TypeName(SequenceManagedAttributeDto.TYPENAME) | ||
| public class SequenceManagedAttributeDto { | ||
| public static final String TYPENAME = "managed-attribute"; | ||
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| @JsonApiId | ||
| @Id | ||
| @PropertyName("id") | ||
| private UUID uuid; | ||
| private String name; | ||
| private String key; | ||
| private TypedVocabularyElement.VocabularyElementType vocabularyElementType; | ||
| private String unit; | ||
| private SequenceManagedAttribute.ManagedAttributeComponent managedAttributeComponent; | ||
| private String[] acceptedValues; | ||
| private OffsetDateTime createdOn; | ||
| private String createdBy; | ||
| private String group; | ||
| private MultilingualDescription multilingualDescription; | ||
|
|
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| } |
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