Allow subsetting simulation conditions in simulate_petab (#2199) #9352
Workflow file for this run
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| name: Installation | |
| on: [push, merge_group, workflow_dispatch] | |
| jobs: | |
| archive: | |
| name: Archive Install | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| matrix: | |
| python-version: [3.9] | |
| steps: | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/checkout@v3 | |
| - run: git fetch --prune --unshallow | |
| - run: echo "AMICI_DIR=$(pwd)" >> $GITHUB_ENV | |
| # install amici dependencies | |
| - name: apt | |
| run: | | |
| sudo apt-get update \ | |
| && sudo apt-get install -y \ | |
| cmake \ | |
| g++ \ | |
| libatlas-base-dev \ | |
| libboost-serialization-dev \ | |
| libhdf5-serial-dev \ | |
| swig | |
| - name: Build suitesparse | |
| run: | | |
| scripts/buildSuiteSparse.sh | |
| - name: Build sundials | |
| run: | | |
| scripts/buildSundials.sh | |
| - name: Build AMICI | |
| run: | | |
| scripts/buildAmici.sh | |
| - name: Install python archive | |
| run: | | |
| scripts/installAmiciArchive.sh | |
| sdist_ubuntu: | |
| name: sdist Install Ubuntu | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| matrix: | |
| python-version: [3.9] | |
| steps: | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/checkout@v3 | |
| - run: git fetch --prune --unshallow | |
| - run: echo "AMICI_DIR=$(pwd)" >> $GITHUB_ENV | |
| # install amici dependencies | |
| - name: apt | |
| run: | | |
| sudo apt-get update \ | |
| && sudo apt-get install -y \ | |
| g++ \ | |
| libatlas-base-dev \ | |
| libboost-serialization-dev \ | |
| libhdf5-serial-dev \ | |
| swig | |
| - name: Create AMICI sdist | |
| run: | | |
| scripts/buildSdist.sh | |
| - name: Install python sdist | |
| run: | | |
| pip3 install -v --user $(ls -t python/sdist/dist/amici-*.tar.gz | head -1) | |
| - name: Test import | |
| run: | | |
| python -m amici | |
| sdist_macos: | |
| name: sdist Install macos | |
| runs-on: macos-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.9] | |
| steps: | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/checkout@v3 | |
| - run: git fetch --prune --unshallow | |
| - run: echo "AMICI_DIR=$(pwd)" >> $GITHUB_ENV | |
| # install amici dependencies | |
| - name: homebrew | |
| run: | | |
| brew install hdf5 swig gcc cppcheck libomp boost \ | |
| && brew ls -v boost \ | |
| && brew ls -v libomp \ | |
| && echo LDFLAGS="-L/usr/local/lib/ -L/usr/local/Cellar/boost/1.81.0_1/lib/" >> $GITHUB_ENV \ | |
| && echo CPPFLAGS="-I /usr/local/Cellar/boost/1.81.0_1/include/" >> $GITHUB_ENV | |
| - name: Create AMICI sdist | |
| run: | | |
| scripts/buildSdist.sh | |
| - name: Install python sdist | |
| run: | | |
| pip3 install -v --user $(ls -t python/sdist/dist/amici-*.tar.gz | head -1) | |
| - name: Test import | |
| run: | | |
| python -m amici |