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Add RDataReporting::observables_likelihood #2627

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merged 1 commit into from
Dec 16, 2024

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@dweindl dweindl commented Dec 16, 2024

Add RDataReporting::observables_likelihood for computing observables, likelihood and the respective sensitivities. Closes #2625.

Fixes allocating ReturnData::sllh despite SensitivityMethod::none.

Add RDataReporting::observables_likelihood for computing observables, likelihood and the respective sensitivities. Closes AMICI-dev#2625.

Fixes allocating sllh despite SensitivityMethod::none.
@dweindl dweindl requested a review from a team as a code owner December 16, 2024 07:37
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codecov bot commented Dec 16, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 77.03%. Comparing base (2d58f54) to head (2168938).

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@@             Coverage Diff             @@
##           develop    #2627      +/-   ##
===========================================
- Coverage    77.05%   77.03%   -0.02%     
===========================================
  Files          332      332              
  Lines        22957    22970      +13     
  Branches      1477     1478       +1     
===========================================
+ Hits         17689    17695       +6     
- Misses        5257     5264       +7     
  Partials        11       11              
Flag Coverage Δ
cpp 73.96% <100.00%> (-0.02%) ⬇️
cpp_python 33.47% <7.14%> (-0.02%) ⬇️
petab 38.32% <0.00%> (-0.04%) ⬇️
python 72.12% <100.00%> (-0.01%) ⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines Coverage Δ
include/amici/rdata.h 100.00% <ø> (ø)
src/rdata.cpp 95.60% <100.00%> (+0.09%) ⬆️

... and 2 files with indirect coverage changes

@dweindl dweindl added this pull request to the merge queue Dec 16, 2024
Merged via the queue into AMICI-dev:develop with commit 3206fce Dec 16, 2024
19 of 20 checks passed
@dweindl dweindl deleted the 2625_llh_obs branch December 16, 2024 12:40
dweindl added a commit to dweindl/AMICI that referenced this pull request Dec 19, 2024
Fixes AMICI-dev#2627. ReturnData.sllh was always NaN because it wasn't 0-initialized.
github-merge-queue bot pushed a commit that referenced this pull request Dec 19, 2024
Fixes #2627. ReturnData.sllh was always NaN because it wasn't 0-initialized.
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2 participants