Code

Dev#27

Code

Merged

svarona merged 52 commits intocustom_gtfBU-ISCIII/viralrecon:custom_gtffrom devBU-ISCIII/viralrecon:devCopy head branch name to clipboardJan 17, 2024

+9,752-589

Commits

Commits on Sep 26, 2023

• Template update for nf-core/tools version 2.10

  nf-core-bot

  committed
  0b1e295

Commits on Oct 23, 2023

• Changed primer set to params

  svarona

  committed
  b96fc77

• Added artic to nextflow config

  svarona

  committed
  79a67f0

• Moved artic primer params value from nextflow config to nanopore test config

  svarona

  committed
  06e82cf

• Added PR to CHANGELOG

  svarona

  committed
  addd692

Commits on Oct 31, 2023

• Merge branch 'TEMPLATE' into dev_template

  svarona

  committed
  ce82ef6

Commits on Nov 2, 2023

• Fixed notes

  svarona

  committed
  977d069

• Fixed a header

  svarona

  committed
  a90a257

• Fixed biocontainers

  svarona

  committed
  4976471

• Added missing change

  svarona

  committed
  66be601

• Fixed quay.io

  svarona

  committed
  67f531e

• removed quay.io from main.nf

  svarona

  committed
  0fd940b

• Fixed again quay.io

  svarona

  committed
  b6804f5

• Fixed test2

  svarona

  committed
  9da284a

• Fixed module

  svarona

  committed
  c3a677d

• mas test

  svarona

  committed
  ff372f7

Commits on Dec 19, 2023

• removed duplicated line

  svarona

  committed
  a507d99

• Template update for nf-core/tools version 2.11

  nf-core-bot

  committed
  9e0a1c2

• updated modules

  saramonzon

  committed
  20dc34d

• fixing modules call according to updates

  saramonzon

  committed
  7f2923b

Commits on Dec 20, 2023

• Fixed lint

  svarona

  committed
  3bd897e

• Template update for nf-core/tools version 2.11.1

  nf-core-bot

  committed
  48f8032

Commits on Dec 21, 2023

• Merge branch 'TEMPLATE' into dev_template

  svarona

  committed
  55bfa3a

• Merge branch 'TEMPLATE' into dev_template

  svarona

  committed
  3c7778c

• Fix prettier

  svarona

  committed
  fa532f6

• pixed prettier

  svarona

  committed
  dcc56b2

Commits on Dec 22, 2023

• Fixed some conflicts

  svarona

  committed
  bf5fd9d

Commits on Dec 27, 2023

• Updated modules

  svarona

  committed
  28ce0d2

• Fixed quast process

  svarona

  committed
  a8ce52a

• Fixed quast for multiqc

  svarona

  committed
  8d57896

• Fixed ref fasta channel

  svarona

  committed
  5d63daf

• Fixed ref fasta channel

  svarona

  committed
  96cdeb7

• Fixed empty channels

  svarona

  committed
  cfea905

• Fixed mosdepth process

  svarona

  committed
  eb7a82d

• Fixed empty fields

  svarona

  committed
  6d5b405

• Fixed quast

  svarona

  committed
  ad5b38a

• Fixed mosdepth

  svarona

  committed
  5ccac08

• Fixed empty channels

  svarona

  committed
  78a4143

• Fixed fasta channel

  svarona

  committed
  661ec68

• Fixed gff channel for empty path

  svarona

  committed
  508e270

Commits on Dec 28, 2023

• Fixed prettier

  svarona

  committed
  566837a

• Fixed empty channels

  svarona

  committed
  bb66560

Commits on Jan 15, 2024

• Download medaka model for nanopore test

  svarona

  committed
  b3d2dbb

Commits on Jan 16, 2024

• Removed TODO comment

  svarona

  committed
  249146a

• Removed igenomes_base

  svarona

  committed
  4c850ba

• removed igenomes_base from validationSchemaIgnoreParams

  svarona

  committed
  8df9b78

• Merge pull request nf-core#408 from BU-ISCIII/dev_template

  Show description for be0473b
  svarona

  authored
  be0473b

• Merge branch 'dev' into artic_primers

  svarona

  committed
  fe0a9ff

• added primer set artic to usage example

  svarona

  committed
  7b19b0a

• added primerset artic to usage examples

  svarona

  committed
  d6ff06c

• Merge pull request nf-core#393 from BU-ISCIII/artic_primers

  Show description for ce72f48
  svarona

  authored
  ce72f48

Commits on Jan 17, 2024

• Merge branch 'custom_gtf' into dev

  svarona

  authored
  b57d083