Add pagination to eCR Viewer homepage #5641

Workflow file for this run

	name: Test
	on:
	workflow_call:
	workflow_dispatch:
	pull_request:
	branches:
	- "**"
	merge_group:
	types:
	- checks_requested
	push:
	branches:
	- main
	paths-ignore:
	- pyproject.toml

	concurrency:
	group: ${{ github.workflow }}-${{ github.ref }}
	cancel-in-progress: true

	env:
	TEST_RUNNER_PYTHON_VERSION: 3.10.12

	jobs:
	postgres-tests:
	runs-on: ubuntu-latest
	services:
	test-db:
	image: postgres:13-alpine3.16
	env:
	POSTGRES_PASSWORD: pw
	POSTGRES_DB: testdb
	POSTGRES_USER: postgres
	# Set health checks to wait until postgres has started
	options: >-
	--health-cmd pg_isready
	--health-interval 10s
	--health-timeout 5s
	--health-retries 5
	--name testdb
	ports:
	- 5432:5432
	steps:
	- name: Checkout
	uses: actions/checkout@v4
	- name: Setup python ${{env.TEST_RUNNER_PYTHON_VERSION}}
	uses: actions/setup-python@v5
	with:
	python-version: ${{env.TEST_RUNNER_PYTHON_VERSION}}
	cache: pip
	- name: Install poetry
	run: \|
	curl -sSL https://install.python-poetry.org \| python3 -
	echo "${HOME}/.poetry/bin" >> $GITHUB_PATH
	- name: Install dependencies
	run: poetry install
	- name: test_postgres_connection
	run: poetry run pytest tests/linkage/test_mpi.py
	unit-test-phdi-building-blocks-lib:
	runs-on: ubuntu-latest
	services:
	test-db:
	image: postgres:13-alpine3.16
	env:
	POSTGRES_PASSWORD: pw
	POSTGRES_DB: testdb
	POSTGRES_USER: postgres
	# Set health checks to wait until postgres has started
	options: >-
	--health-cmd pg_isready
	--health-interval 10s
	--health-timeout 5s
	--health-retries 5
	--name testdb
	ports:
	- 5432:5432
	steps:
	- name: Checkout
	uses: actions/checkout@v4
	- name: Setup python ${{env.TEST_RUNNER_PYTHON_VERSION}}
	uses: actions/setup-python@v5
	with:
	python-version: ${{env.TEST_RUNNER_PYTHON_VERSION}}
	cache: pip
	- name: Install poetry
	run: \|
	curl -sSL https://install.python-poetry.org \| python3 -
	echo "${HOME}/.poetry/bin" >> $GITHUB_PATH
	- name: Install dependencies
	run: poetry install
	- name: Run pytest with code coverage output
	run: poetry run pytest --cov-report xml --cov=phdi tests/
	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v3
	with:
	flags: unit-tests

	ensure-clean-notebooks:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout
	uses: actions/checkout@v4
	- name: Check notebook cleanliness
	uses: ResearchSoftwareActions/[email protected]

	list-containers:
	uses: ./.github/workflows/listContainers.yaml

	unit-test-python-containers:
	needs: list-containers
	runs-on: ubuntu-latest
	services:
	test-db:
	image: postgres:13-alpine3.16
	env:
	POSTGRES_PASSWORD: pw
	POSTGRES_DB: testdb
	POSTGRES_USER: postgres

	# Set health checks to wait until postgres has started
	options: >-
	--health-cmd pg_isready
	--health-interval 10s
	--health-timeout 5s
	--health-retries 5
	--name testdb
	ports:
	- 5432:5432
	strategy:
	matrix:
	container-to-test: ${{fromJson(needs.list-containers.outputs.python-containers)}}
	steps:
	- name: Checkout
	uses: actions/checkout@v4
	- name: Setup python ${{env.TEST_RUNNER_PYTHON_VERSION}}
	uses: actions/setup-python@v5
	with:
	python-version: ${{env.TEST_RUNNER_PYTHON_VERSION}}
	cache: pip
	- name: Install Pytest
	run: pip install pytest
	- name: Install dependencies
	working-directory: ./containers/${{matrix.container-to-test}}
	run: \|
	if [[ ${{matrix.container-to-test}} == "dibbs" ]]; then
	pip install .
	elif [[ $GITHUB_REF != "refs/heads/main" ]]; then
	commit_hash=$(git rev-parse HEAD)
	find ./ -name requirements.txt -exec sed -i -e "s/phdi@main/phdi@${commit_hash}/g" {} \;
	fi
	pip install -r requirements.txt
	if [ -f dev-requirements.txt ]; then
	pip install -r dev-requirements.txt
	fi
	- name: Run unit tests for containers
	env:
	MPI_DBNAME: testdb
	MPI_PASSWORD: pw
	MPI_DB_TYPE: postgres
	MPI_HOST: localhost
	MPI_USER: postgres
	MPI_PORT: 5432
	MPI_PATIENT_TABLE: patient
	MPI_PERSON_TABLE: person
	working-directory: ./containers/${{matrix.container-to-test}}
	run: \|
	python -m pytest -m "not integration"
	integration-test-python-containers:
	needs: list-containers
	runs-on: ubuntu-latest
	timeout-minutes: 30
	strategy:
	matrix:
	directories-to-test: ${{fromJson(needs.list-containers.outputs.integration-dirs)}}
	steps:
	- name: Checkout
	uses: actions/checkout@v4
	- name: Setup python ${{env.TEST_RUNNER_PYTHON_VERSION}}
	uses: actions/setup-python@v5
	with:
	python-version: ${{env.TEST_RUNNER_PYTHON_VERSION}}
	cache: pip
	- name: Install Pytest
	run: pip install pytest
	- name: Install dependencies
	working-directory: ./containers/${{matrix.directories-to-test}}
	# When running as a PR check, instead of importing the SDK from @main,
	# import it from the current commit. (Need to do this for all containers)
	run: \|
	if [[ $GITHUB_REF != "refs/heads/main" ]]; then
	commit_hash=$(git rev-parse HEAD)
	cd ..
	find ./ -name requirements.txt -exec sed -i -e "s/phdi@main/phdi@${commit_hash}/g" {} \;
	cd ${{matrix.directories-to-test}}
	fi
	pip install -r requirements.txt
	if [ -f dev-requirements.txt ]; then
	pip install -r dev-requirements.txt
	fi
	- name: Run integration tests for containers
	working-directory: ./containers/${{matrix.directories-to-test}}/tests/integration
	run: \|
	python -m pytest -m "integration"

	test-node-containers:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout code
	uses: actions/checkout@v4
	- name: Set up Node.js
	uses: actions/setup-node@v2
	with:
	node-version: 18 # Adjust the Node.js version as needed
	- name: Install dependencies
	working-directory: ./containers/ecr-viewer # Navigate to your Node.js app directory
	run: npm install
	- name: Run tests
	working-directory: ./containers/ecr-viewer # Navigate to your Node.js app directory
	run: npm test

	unit-test-dotnet-fhir-converter:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout code
	uses: actions/checkout@v4
	- name: Setup dotnet
	uses: actions/setup-dotnet@v3
	with:
	dotnet-version: "8.0.x"
	- name: Run tests
	working-directory: ./containers/fhir-converter # Navigate to your Node.js app directory
	run: dotnet test

	cypress-e2e-tests:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout code
	uses: actions/checkout@v4
	- name: Set up Node.js
	uses: actions/setup-node@v2
	with:
	node-version: 18 # Adjust the Node.js version as needed
	- name: Install dependencies
	working-directory: ./containers/ecr-viewer # Navigate to your Node.js app directory
	run: npm install

	- name: Start ecr-viewer
	working-directory: ./containers/ecr-viewer
	run: docker compose up -d

	- name: Wait for server to be ready
	run: \|
	until $(curl --output /dev/null --silent --head --fail http://localhost:3000); do
	echo "Waiting for server to be ready..."
	sleep 5
	done

	- name: Run cypress tests
	working-directory: ./containers/ecr-viewer
	run: npm run cypress:run

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Add pagination to eCR Viewer homepage #5641

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Add pagination to eCR Viewer homepage #5641

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Workflow file for this run