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Merging unstable to develop#484

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llaniewski merged 123 commits intodevelopCFD-GO/TCLB:developfrom unstableCFD-GO/TCLB:unstableCopy head branch name to clipboardJan 9, 2024

+110,066-5,892

Commits

Commits on Nov 6, 2023

• Major refactor in preparation for arbitrary grid implementation

  kubagalecki

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  cef220c

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• Fixing solid tests makefile

  kubagalecki

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• Fixing sign conversion and no return value warnings

  kubagalecki

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• fixed ignored return value and string format warnings

  kubagalecki

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• fixed passing std::string to vararg function

  kubagalecki

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• fixed missing parens

  kubagalecki

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• fixed const correctness in Lattice::Get_X

  kubagalecki

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• fixed Python support

  kubagalecki

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• fixed mkdir_p utility

  kubagalecki

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• Updated "compare.cpp" from features/conversion branch

  kubagalecki

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• revert to old compare.cpp

  kubagalecki

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Commits on Nov 7, 2023

• Adding asserts on the piece regions in compare

  llaniewski

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  59800c6

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• Merge pull request #1 from llaniewski/patch-2

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  kubagalecki

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• Fixed region passed to VTK writer

  kubagalecki

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  74c48e3

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• Fix solver outliving CUDA and MPI + cosmetic issues

  kubagalecki

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Commits on Nov 8, 2023

• Merge pull request #460 from kubagalecki/develop

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  llaniewski

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Commits on Nov 13, 2023

• Merge remote-tracking branch 'origin/develop' into unstable

  llaniewski

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• Merge remote-tracking branch 'origin/develop' into unstable

  llaniewski

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Commits on Nov 20, 2023

• Read arbitrary lattice from file + small utilities

  kubagalecki

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  37157c1

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• added utility for exporting to arbitrary grid (.cxn) format

  kubagalecki

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• toArb is now called before lattice initialization (alleviates memory constraints)

  kubagalecki

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  ae451d2

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• Added arbitrary lattice reading and partitioning

  kubagalecki

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  eec8568

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• Fixed R bug in determining unique offset directions

  kubagalecki

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• Added static assertion on stencil symmetry

  kubagalecki

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Commits on Nov 21, 2023

• Model information now exposed via static constexpr objects (RTemplate encapsulation)

  kubagalecki

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Commits on Nov 22, 2023

• Local node permutation for arb lattice

  kubagalecki

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• Merge remote-tracking branch 'origin/develop' into unstable

  llaniewski

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Commits on Nov 23, 2023

• Device memory allocation for arbitrary lattice

  kubagalecki

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• Arbitrary lattice LIDs are now unsigned

  kubagalecki

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• Dynamic offset index lookup

  kubagalecki

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Commits on Nov 24, 2023

• Groups/zones in ArbLattice done (host + device)

  kubagalecki

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Commits on Nov 26, 2023

• minor refactor of node types for ArbLattice

  kubagalecki

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Commits on Nov 27, 2023

• Added ArbLattice handler, refactore initialization

  kubagalecki

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  b7304d0

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• Arbitrary lattice snaps now correctly stored as storage_t

  kubagalecki

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• Fixed missing declaration in types.h

  kubagalecki

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  ccd1ce8

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• Added braces around sub-object initialization to satisfy llvm warning

  kubagalecki

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Commits on Nov 29, 2023

• Renamed Lattice to CartLattice

  kubagalecki

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• cross.h disabled in Solid tests

  kubagalecki

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  89a6bad

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• Temporarily disabled ArbLatticeX files

  kubagalecki

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  2f4b0df

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• fixed config.h outside of include guard in cross.h

  kubagalecki

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  8d13f03

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• R-based dispatch to actions now private for CartLattice

  kubagalecki

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• RunAction in CartLattice marked as final

  kubagalecki

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  2a41acb

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Commits on Nov 30, 2023

• Preliminary working version of computations on arbitrary lattices

  kubagalecki

  committed
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Commits on Dec 1, 2023

• Added default for Z arg in ArbLatticeAccess::load_X to maintain correctness for 2D models

  kubagalecki

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  8ab41bc

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• Fixed dynamic lookup init for ArbLattice

  kubagalecki

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• Explicitly deleted copy semantics for ArbLattice to satisfy llvm warning

  kubagalecki

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• Explicitly deleted copy semantics for ArbLattice to satisfy llvm warning

  kubagalecki

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  f4954d9

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• fixed snap type in ArbLatticeContainer

  kubagalecki

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  3f4ea35

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• Cuts for arb lattice now compile and error out at runtime

  kubagalecki

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  f577e11

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• nvcc bug(?) workaround

  kubagalecki

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Commits on Dec 4, 2023

• Reverting CPU kernel param types to uint3

  kubagalecki

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  4aa0b6c

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• Fixed ob1 bug in stencil size computation

  kubagalecki

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  1b0849a

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• VTU geometry added to ArbLattice

  kubagalecki

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  9dfeaa5

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• Added GetQuantity executor to arb lattice

  kubagalecki

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  1e25111

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• Added quantity getters for arb lattice

  kubagalecki

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  58a2d03

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Commits on Dec 7, 2023

• vtu export working, WIP: debugging arb. kernels

  kubagalecki

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• debugged kernels

  kubagalecki

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  f21e4b9

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Commits on Dec 8, 2023

• Debugged globals

  kubagalecki

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• WIP: MPI for arb lattice

  kubagalecki

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  38acb75

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• Correcting passing vector by value in initCommManager

  llaniewski

  committed
  73f3b96

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• Fixed lifetime bug in arb MPI init

  kubagalecki

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Commits on Dec 9, 2023

• Some mods for paranoid

  llaniewski

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Commits on Dec 10, 2023

• Adding debug vtu

  llaniewski

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Commits on Dec 11, 2023

• Adding debug dump files for ArbLattice

  llaniewski

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• Correcting the inverse of permutation in computeLocalPermutation

  llaniewski

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  851b6de

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• Merge branch 'arbitrary-grid-develop' into arbitrary-grid-patch-1

  llaniewski

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• Adding missing specialisation of mpi type

  llaniewski

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  1ec9531

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• Merge pull request #2 from llaniewski/arbitrary-grid-patch-1

  kubagalecki

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• Merge pull request #3 from kubagalecki/arbitrary-grid-develop

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  kubagalecki

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Commits on Dec 12, 2023

• Some more debug information

  llaniewski

  committed
  89d58be

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• Even more debug information

  llaniewski

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  95ec223

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• Removed graph row sort

  llaniewski

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Commits on Dec 13, 2023

• Merge pull request #462 from kubagalecki/arbitrary-grid

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  llaniewski

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• corrections for paranoid

  llaniewski

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Commits on Dec 16, 2023

• Merge pull request #467 from llaniewski/arbitrary-grid-debug

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• Merge remote-tracking branch 'origin/develop' into unstable

  llaniewski

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Commits on Dec 19, 2023

• Merge remote-tracking branch 'origin/develop' into unstable

  llaniewski

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  cd5be39

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• Clearing RT from Solver.h

  llaniewski

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  c6fd807

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• Removing remnants of travis-ci

  llaniewski

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• Removing RT from Solver log

  llaniewski

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• Moving sides to array

  llaniewski

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  3ff5d9c

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• Removing RT from Solver

  llaniewski

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• Removing RT from Geometry

  llaniewski

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• Removing RT from Global.cpp

  llaniewski

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• Removing RT from Global.h

  llaniewski

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• First moves towards working RunR

  llaniewski

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Commits on Dec 20, 2023

• + initial fix to remove nan. todo-new field for solid, remove edge race condition

  TravisMitchell

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  bcad0ef

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• + add nan flag for cart grid as well for consistent behaviour

  TravisMitchell

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  8a8a277

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• + comment print statements

  TravisMitchell

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• Streamlined intefraces

  llaniewski

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• Adding formatting of R code to tools/format.sh

  llaniewski

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• + adjust calc grad phi for efficiency, maintainability, and consistency

  TravisMitchell

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• Merge pull request #472 from llaniewski/feature/formatR

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• Merge pull request #471 from TravisMitchell/arb-fix/d2q9_pf_velocity

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• Merge remote-tracking branch 'cfdgo/unstable' into unstable-refactor

  llaniewski

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• Adding missing headers

  llaniewski

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• Correcting tests/solid

  llaniewski

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Commits on Dec 21, 2023

• + fix loop as we need to include first weight for denom

  TravisMitchell

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• + fix paranoid compile for potential uninitiation

  TravisMitchell

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• Merge pull request #474 from TravisMitchell/arb-fix/d2q9_pf_velocity

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  llaniewski

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Commits on Dec 28, 2023

• Minor refactor of arb debug facilities

  kubagalecki

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• Allow the user to initialize NVFLAGS

  kubagalecki

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• toArb optimizations

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Commits on Dec 29, 2023

• Implemented failcheck handler for arbitrary grid

  kubagalecki

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• Strategy selection for computing the local permutation

  kubagalecki

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Commits on Dec 31, 2023

• Default permutation strategy changed to "coords"

  kubagalecki

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• BIN handler for arb lattice

  kubagalecki

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• Added TXT handler for arb lattice

  kubagalecki

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• Added facilities for saving/loading the solution to/from binary files, with corresponding handlers

  kubagalecki

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Commits on Jan 3, 2024

• Merge remote-tracking branch 'kubagalecki/arbitrary-grid' into unstable-merge

  llaniewski

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• Merge remote-tracking branch 'origin/develop' into unstable

  llaniewski

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• Merge remote-tracking branch 'cfdgo/unstable' into unstable-refactor

  llaniewski

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• Fixing comparison in RunR

  llaniewski

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  c6b2c9e

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• Adding missing override keywords

  llaniewski

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  2691cbb

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• Correcting getPar (and related) functions)

  llaniewski

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  d90e9e7

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• Correcting error in getCoords

  llaniewski

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• Correcting another error in getCoords

  llaniewski

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• Correcting error in nodetype assign in RunR

  llaniewski

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Commits on Jan 5, 2024

• Merge remote-tracking branch 'origin/develop' into unstable

  llaniewski

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• Merge remote-tracking branch 'cfdgo/unstable' into unstable-refactor

  llaniewski

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  9e8cf4f

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• Adding default densities to ArbLatticeAccess

  llaniewski

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Commits on Jan 8, 2024

• Fixing hdf5 for cartesian lattice

  llaniewski

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• Merge pull request #481 from llaniewski/unstable-refactor

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