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Nwb integration#28

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mhturner wants to merge 35 commits intomainClandininLab/stimpack:mainfrom nwb_integrationClandininLab/stimpack:nwb_integrationCopy head branch name to clipboard

+1,824-8

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Commits on Nov 14, 2023

• support nwb I draft

  h-mayorquin

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  cde9195

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Commits on Nov 16, 2023

• complete add subject

  h-mayorquin

  committed
  1145eb2

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• add support for epoch runs

  h-mayorquin

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Commits on Nov 17, 2023

• add epochs now completed

  h-mayorquin

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  55cb6fc

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• add notes

  h-mayorquin

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Commits on Dec 11, 2023

• add support for expanding notes

  h-mayorquin

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Commits on Dec 12, 2023

• add support for expanding sets

  h-mayorquin

  committed
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Commits on Mar 20, 2024

• Merge pull request #26 from h-mayorquin/support_nwb_I

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  mhturner

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  65111c7

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Commits on Mar 27, 2024

• first nwb integration changes, gui not fixed

  mhturner

  committed
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Commits on Apr 8, 2024

• fetch subject dict for new expt file

  mhturner

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Commits on Apr 11, 2024

• fixing init exp pt 1

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  seththomasjohnson

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  22f43d0

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Commits on Apr 20, 2024

• Opdates for new file each SERIES now. Basic OK for starting new but need to fix loading, changing series, data tree, etc etc

  mhturner

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Commits on Apr 22, 2024

• fixes for loading existing experiments, subjects

  mhturner

  committed
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Commits on Apr 29, 2024

• cur subject display bug in gui

  mhturner

  committed
  51c3da2

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• subj id mismatch with labpack data module

  mhturner

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Commits on Apr 30, 2024

• update subject metadata from cfg, and new notes csv for whole expt

  mhturner

  committed
  99f18bd

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• tracking down very weird segfault on linux when writing nwb

  mhturner

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Commits on May 3, 2024

• tracking down segfault, just finding clues..

  mhturner

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Commits on May 5, 2024

• segfault clue - fault when main gui thread comes back, not problem with nwb writing

  mhturner

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• segfault FIXED - have to first create the file outside the qthread, then can append to it within thread. Not sure why, but this is how OG stimpack works. Still segfaults on GUI close and need to fi…

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  mhturner

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Commits on Jun 4, 2024

• split nwb gui and data module from visprotocol legacy data format versions

  

  Max Turner

  committed
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Commits on Jun 5, 2024

• server subdir fix for nwb vs legacy

  mhturner

  committed
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Commits on Jun 28, 2024

• dumb hack for saving trial table when different trials may have different param keys, like multi-stim suites

  mhturner

  committed
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Commits on Jul 3, 2024

• uncommented code to actually save epoch run parameters! Doh

  mhturner

  committed
  2670544

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• Merge branch 'main' into nwb_integration

  minseungchoi

  authored
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• Add pynwb dependency in setup.py and fix version no.

  minseungchoi

  committed
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Commits on Jul 4, 2024

• Merge in multi-protocol feature from main into gui_nwb

  minseungchoi

  committed
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• setup.py Add stimpack_nwb entry point for convenience

  minseungchoi

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• gui_nwb defaults to NWBData

  minseungchoi

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Commits on Jul 5, 2024

• fix path bug in data dir selection from gui

  

  Max Turner

  committed
  9f7b28b

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• Merge pull request #34 from ClandininLab/main

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  mhturner

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Commits on Jul 24, 2024

• data nwb bug fix for save_stringified_params for multicomponent stims

  

  Max Turner

  committed
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Commits on Jul 25, 2024

• data_nwb trials table give maxshape instead of None which meant only uint8 rows

  

  Max Turner

  committed
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Commits on Sep 17, 2024

• nwb datafile name now defaults to yyyymmdd_subjname_series.nwb

  mhturner

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Commits on Sep 20, 2024

• tuple trial params now just get stringified instead of that index thing, which was causing issues for greater than 255/2 trials

  mhturner

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