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add check for empty fasta header #1467

Merged
merged 1 commit into from
Aug 23, 2024
Merged

add check for empty fasta header #1467

merged 1 commit into from
Aug 23, 2024

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glennhickey
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I was trying to reproduce the lastz failure from #1466 by adding a sequence like

>
ACACACACCAC

to the FASTA. lastz seems to support this okay by inventing its own sequence name for it, but it crashes downstream in consolidated.

Anyway, this patches the fasta checker to through an error right away in this case. But I don't think helps at all with the original issue.

@glennhickey glennhickey merged commit e70815a into master Aug 23, 2024
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