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Stop CLI options from being overriden by Gunicorn's defaults #4528

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merged 1 commit into from
Jul 14, 2023

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@stxue1 stxue1 commented Jul 11, 2023

This fixes #4275. The order of applying settings was reversed where Gunicorn's defaults were being applied last.

Changelog Entry

To be copied to the draft changelog by merger:

  • CLI server options no longer get overwritten by Gunicorn's default arguments

Reviewer Checklist

  • Make sure it is coming from issues/XXXX-fix-the-thing in the Toil repo, or from an external repo.
    • If it is coming from an external repo, make sure to pull it in for CI with:
      contrib/admin/test-pr otheruser theirbranchname issues/XXXX-fix-the-thing
      
    • If there is no associated issue, create one.
  • Read through the code changes. Make sure that it doesn't have:
    • Addition of trailing whitespace.
    • New variable or member names in camelCase that want to be in snake_case.
    • New functions without type hints.
    • New functions or classes without informative docstrings.
    • Changes to semantics not reflected in the relevant docstrings.
    • New or changed command line options for Toil workflows that are not reflected in docs/running/{cliOptions,cwl,wdl}.rst
    • New features without tests.
  • Comment on the lines of code where problems exist with a review comment. You can shift-click the line numbers in the diff to select multiple lines.
  • Finish the review with an overall description of your opinion.

Merger Checklist

  • Make sure the PR passes tests.
  • Make sure the PR has been reviewed since its last modification. If not, review it.
  • Merge with the Github "Squash and merge" feature.
    • If there are multiple authors' commits, add Co-authored-by to give credit to all contributing authors.
  • Copy its recommended changelog entry to the Draft Changelog.
  • Append the issue number in parentheses to the changelog entry.

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@DailyDreaming DailyDreaming left a comment

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LGTM.

@DailyDreaming DailyDreaming merged commit c9f766d into master Jul 14, 2023
@DailyDreaming DailyDreaming deleted the issues/4275-toil-ignores-host branch July 14, 2023 07:28
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WES ignores host in production
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