Dfam TE Tools 1.90

See CHANGELOG for details

Dfam TE Tools 1.89.2

Fixing a the Ninja path in the RepeatModeler config

Dfam TE Tools 1.89.1

Patch of 1.89, see the CHANGELOG and Version 1.89 for details

Dfam TE Tools 1.89

See the CHANGELOG for version details.

Note that this release contains changes to the FamDB file included with RepeatMasker. TETools now contains a minimal installation of FamDB intended to allow the programs that rely on it to function, but nothing more. Additional installation of FamDB files (as described in the README) will be necessary for any operations that depend on Dfam data. dfam-tetools.sh has been updated to assist with running the container with external libraries.

Additionally, this version of TETools does not have complete arm64 architecture compatibility. RMBlast and the UCSC tools specifically will not work.

Dfam TE Tools 1.88

Note that as of version 1.88 TETools contains RepeatMasker 4.1.6. This version of RepeatMasker uses a new version of FamDB (https://github.com/Dfam-consortium/FamDB) with a new format. This README contains instructions for modifying the files available to the TETools container, but the README file in the FamDB repository contains more information on the format itself.

Dfam TE Tools 1.87

See the CHANGELOG for details.

Dfam TE Tools 1.85

See CHANGELOG for details

Dfam TE Tools 1.8

See the CHANGELOG for details.

Dfam TE Tools 1.7

See the CHANGELOG for details.

Dfam TE Tools 1.6

See the CHANGELOG for details.