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add output file from antismash_gff_builder unit test to repo
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tests/unit/analysis/assembly/antismash_gff_builder/test.gff
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| ##gff-version 3 | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 region 1 30782 . . . ID=NODE_1_length_31398_cov_44.290974_region1;product=HR-T2PKS | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 229 579 . + . ID=1_1;as_type=other;Parent=NODE_1_length_31398_cov_44.290974_region1 | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 622 1230 . - . ID=1_2;as_type=regulatory;gene_functions=regulatory_(smcogs)_SMCOG1016:LuxR_family_DNA-binding_response_regulator_(Score:140.4%3BE-value:7.7e-43);Parent=NODE_1_length_31398_cov_44.290974_region1;as_notes=smCOG:SMCOG1016:LuxR_family_DNA-binding_response_regulator(Score:140.4%3BE-value:7.7e-43) | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 1227 2396 . - . ID=1_3;as_type=regulatory;gene_functions=regulatory_(smcogs)_SMCOG1048:sensor_histidine_kinase_(Score:121.3%3BE-value:8.5e-37);Parent=NODE_1_length_31398_cov_44.290974_region1 | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 2430 2561 . - . ID=1_4;as_type=other;Parent=NODE_1_length_31398_cov_44.290974_region1 | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 2675 4897 . - . ID=1_5;as_type=other;Parent=NODE_1_length_31398_cov_44.290974_region1 | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 4959 5108 . + . ID=1_6;as_type=other;Parent=NODE_1_length_31398_cov_44.290974_region1 | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 5174 6619 . - . ID=1_7;as_type=transport;gene_functions=transport_(smcogs)_SMCOG1005:Drug_resistance_transporter,_EmrB/QacA_(Score:269.7%3BE-value:5.7e-82);Parent=NODE_1_length_31398_cov_44.290974_region1 | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 6645 7778 . - . ID=1_8;as_type=other;Parent=NODE_1_length_31398_cov_44.290974_region1 | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 7775 8446 . - . ID=1_9;as_type=other;Parent=NODE_1_length_31398_cov_44.290974_region1 | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 8443 10782 . - . ID=1_10;as_type=biosynthetic;gene_functions=biosynthetic_(rule-based-clusters)_HR-T2PKS:hr-t2pks-ksa,biosynthetic_(rule-based-clusters)_HR-T2PKS:t2fas,biosynthetic-additional_(smcogs)_SMCOG1022:Beta-ketoacyl_synthase_(Score:72.9%3BE-value:4.1e-22);Parent=NODE_1_length_31398_cov_44.290974_region1;as_gene_clusters=HR-T2PKS | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 10788 11792 . - . ID=1_11;as_type=other;Parent=NODE_1_length_31398_cov_44.290974_region1 | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 11839 13881 . - . ID=1_12;as_type=other;Parent=NODE_1_length_31398_cov_44.290974_region1 | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 13911 14414 . - . ID=1_13;as_type=biosynthetic-additional;gene_functions=biosynthetic-additional_(smcogs)_SMCOG1270:UDP-3-O-[3-hydroxymyristoyl]_N-acetylglucosamine_(Score:87.2%3BE-value:1.9e-26);Parent=NODE_1_length_31398_cov_44.290974_region1 | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 14411 14707 . - . ID=1_14;as_type=biosynthetic-additional;gene_functions=biosynthetic-additional_(rule-based-clusters)_PP-binding;Parent=NODE_1_length_31398_cov_44.290974_region1;as_gene_clusters=HR-T2PKS | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 14750 15538 . - . ID=1_15;as_type=biosynthetic-additional;gene_functions=biosynthetic-additional_(rule-based-clusters)_adh_short,biosynthetic-additional_(rule-based-clusters)_adh_short_C2,biosynthetic-additional_(smcogs)_SMCOG1001:short-chain_dehydrogenase/reductase_SDR_(Score:228.8%3BE-value:1.2e-69);Parent=NODE_1_length_31398_cov_44.290974_region1;as_gene_clusters=HR-T2PKS | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 15535 16560 . - . ID=1_16;as_type=biosynthetic-additional;gene_functions=biosynthetic-additional_(smcogs)_SMCOG1158:ornithine_cyclodeaminase_(Score:311.8%3BE-value:6.8e-95);Parent=NODE_1_length_31398_cov_44.290974_region1 | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 16557 17621 . - . ID=1_17;as_type=biosynthetic-additional;gene_functions=biosynthetic-additional_(rule-based-clusters)_PALP,biosynthetic-additional_(smcogs)_SMCOG1081:cysteine_synthase_(Score:364%3BE-value:8.8e-111);Parent=NODE_1_length_31398_cov_44.290974_region1;as_gene_clusters=HR-T2PKS | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 17605 19911 . - . ID=1_18;as_type=biosynthetic-additional;gene_functions=biosynthetic-additional_(rule-based-clusters)_Lant_dehydr_N;Parent=NODE_1_length_31398_cov_44.290974_region1;as_gene_clusters=HR-T2PKS | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 19908 21095 . - . ID=1_19;as_type=biosynthetic-additional;gene_functions=biosynthetic-additional_(rule-based-clusters)_Aminotran_1_2,biosynthetic-additional_(smcogs)_SMCOG1019:aminotransferase_(Score:274.6%3BE-value:2.2e-83);Parent=NODE_1_length_31398_cov_44.290974_region1;as_gene_clusters=HR-T2PKS | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 21100 21333 . - . ID=1_20;as_type=biosynthetic-additional;gene_functions=biosynthetic-additional_(rule-based-clusters)_PP-binding;Parent=NODE_1_length_31398_cov_44.290974_region1;as_gene_clusters=HR-T2PKS | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 21372 22835 . - . ID=1_21;as_type=biosynthetic-additional;gene_functions=biosynthetic-additional_(rule-based-clusters)_AMP-binding,biosynthetic-additional_(smcogs)_SMCOG1002:AMP-dependent_synthetase_and_ligase_(Score:320%3BE-value:3.8e-97);Parent=NODE_1_length_31398_cov_44.290974_region1;as_gene_clusters=HR-T2PKS | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 22835 23770 . - . ID=1_22;as_type=biosynthetic-additional;gene_functions=biosynthetic-additional_(rule-based-clusters)_PKS_AT,biosynthetic-additional_(smcogs)_SMCOG1021:malonyl_CoA-acyl_carrier_protein_transacylase_(Score:180.7%3BE-value:8.9e-55);Parent=NODE_1_length_31398_cov_44.290974_region1;as_gene_clusters=HR-T2PKS | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 23804 24598 . - . ID=1_23;as_type=other;Parent=NODE_1_length_31398_cov_44.290974_region1 | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 24600 25505 . - . ID=1_24;as_type=transport;gene_functions=transport_(smcogs)_SMCOG1000:ABC_transporter_ATP-binding_protein_(Score:179.6%3BE-value:1.3e-54);Parent=NODE_1_length_31398_cov_44.290974_region1 | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 25605 26243 . - . ID=1_25;as_type=other;Parent=NODE_1_length_31398_cov_44.290974_region1 | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 26422 27279 . - . ID=1_26;as_type=other;Parent=NODE_1_length_31398_cov_44.290974_region1 | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 27405 28097 . + . ID=1_27;as_type=other;Parent=NODE_1_length_31398_cov_44.290974_region1 | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 28106 29113 . - . ID=1_28;as_type=regulatory;gene_functions=regulatory_(smcogs)_SMCOG1078:LacI_family_transcription_regulator_(Score:272.5%3BE-value:8.9e-83);Parent=NODE_1_length_31398_cov_44.290974_region1 | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 29309 29722 . + . ID=1_29;as_type=other;Parent=NODE_1_length_31398_cov_44.290974_region1 | ||
| NODE_1_length_31398_cov_44.290974 antiSMASH:7.1.0 gene 29670 30644 . + . ID=1_30;as_type=biosynthetic-additional;gene_functions=biosynthetic-additional_(smcogs)_SMCOG1143:sugar-binding_lipoprotein_(Score:127.4%3BE-value:1.4e-38);Parent=NODE_1_length_31398_cov_44.290974_region1 | ||
| NODE_26_length_8811_cov_5.714938 antiSMASH:7.1.0 region 1 8811 . . . ID=NODE_26_length_8811_cov_5.714938_region1;product=RRE-containing,thiopeptide | ||
| NODE_26_length_8811_cov_5.714938 antiSMASH:7.1.0 gene 3 515 . - . ID=26_1;as_type=other;Parent=NODE_26_length_8811_cov_5.714938_region1 | ||
| NODE_26_length_8811_cov_5.714938 antiSMASH:7.1.0 gene 512 2107 . - . ID=26_2;as_type=biosynthetic;gene_functions=biosynthetic_(rule-based-clusters)_RRE-containing:Thiopeptide_F_RRE;Parent=NODE_26_length_8811_cov_5.714938_region1;as_gene_clusters=RRE-containing,thiopeptide | ||
| NODE_26_length_8811_cov_5.714938 antiSMASH:7.1.0 gene 2104 2679 . - . ID=26_3;as_type=other;Parent=NODE_26_length_8811_cov_5.714938_region1 | ||
| NODE_26_length_8811_cov_5.714938 antiSMASH:7.1.0 gene 2725 4044 . - . ID=26_4;as_type=biosynthetic;gene_functions=biosynthetic_(rule-based-clusters)_thiopeptide:YcaO,biosynthetic_(rule-based-clusters)_thiopeptide:TIGR03604;Parent=NODE_26_length_8811_cov_5.714938_region1;as_gene_clusters=RRE-containing,thiopeptide | ||
| NODE_26_length_8811_cov_5.714938 antiSMASH:7.1.0 gene 4044 5126 . - . ID=26_5;as_type=other;Parent=NODE_26_length_8811_cov_5.714938_region1 | ||
| NODE_26_length_8811_cov_5.714938 antiSMASH:7.1.0 gene 5123 6046 . - . ID=26_6;as_type=biosynthetic;gene_functions=biosynthetic_(rule-based-clusters)_thiopeptide:Lant_dehydr_C;Parent=NODE_26_length_8811_cov_5.714938_region1;as_gene_clusters=RRE-containing,thiopeptide | ||
| NODE_26_length_8811_cov_5.714938 antiSMASH:7.1.0 gene 6057 8669 . - . ID=26_7;as_type=biosynthetic;gene_functions=biosynthetic_(rule-based-clusters)_thiopeptide:Lant_dehydr_N,biosynthetic-additional_(smcogs)_SMCOG1155:Lantibiotic_dehydratase_domain_protein_(Score:52.6%3BE-value:2.7e-16);Parent=NODE_26_length_8811_cov_5.714938_region1;as_gene_clusters=RRE-containing,thiopeptide;as_notes=smCOG:SMCOG1155:Lantibiotic_dehydratase_domain_protein(Score:52.6%3BE-value:2.7e-16) |