try new sort

EBI-Metagenomics · Jul 12, 2024 · e274cfa · e274cfa
1 parent ce782dd
commit e274cfa
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Showing 2 changed files with 2 additions and 3 deletions.
diff --git a/mgnify_pipelines_toolkit/analysis/amplicon/make_asv_count_table.py b/mgnify_pipelines_toolkit/analysis/amplicon/make_asv_count_table.py
@@ -17,14 +17,12 @@
 import argparse
 from collections import defaultdict
 import logging
-import random
 
 import pandas as pd
 
 from mgnify_pipelines_toolkit.constants.tax_ranks import _SILVA_TAX_RANKS, _PR2_TAX_RANKS
 
 logging.basicConfig(level=logging.DEBUG)
-random.seed(12)
 
 def parse_args():
     parser = argparse.ArgumentParser()
@@ -238,6 +236,7 @@ def generate_asv_count_dict(asv_dict):
         res_dict['count'].append(count)
 
     res_df = pd.DataFrame.from_dict(res_dict)
+    res_df = res_df.sort_values(by='asv', ascending=True)
     res_df = res_df.sort_values(by='count', ascending=False)
 
     return res_df

diff --git a/tests/unit/analysis/amplicon/make_asv_count_table/test_make_asv_count_table.yml b/tests/unit/analysis/amplicon/make_asv_count_table/test_make_asv_count_table.yml
@@ -14,4 +14,4 @@
     - path: "sample_concat.txt_pr2_asv_krona_counts.txt"
       md5sum: 5b9ee7fe1109d728ab18a95c232b0c1b
     - path: "sample_concat.txt_asv_read_counts.tsv"
-      md5sum: e449c65abb1706d770de36b90f4a0333
+      md5sum: f195ac10c5ed58ea5e5fa91955554da7