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@GavinHaLab

GavinHaLab

Cancer Genomics and Computational Biology Lab at Fred Hutch

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  1. ichorCNA Public

    Forked from broadinstitute/ichorCNA

    Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

    R 15 10

  2. Griffin Public

    Forked from adoebley/Griffin

    A flexible framework for nucleosome profiling of cell-free DNA

    Python 8 4

  3. TitanCNA_SV_WGS Public

    R 1 1

  4. PEARL Public

    Jupyter Notebook 1

  5. Keraon Public

    Forked from denniepatton/Keraon

    A tool for estimating heterogenous phenotype fractions from ctDNA features

    Python 1

Repositories

Showing 10 of 30 repositories
  • Sequencing_analysis_assignment Public

    Sequencing analysis questions

    0 MIT 2 0 0 Updated Apr 1, 2025
  • PEARL Public
    Jupyter Notebook 1 0 0 0 Updated Apr 1, 2025
  • TitanCNA_SV_WGS Public
    R 1 MIT 1 0 3 Updated Mar 28, 2025
  • ichorCurate Public Forked from ajnetzley/ichorCurate

    A solution curation application to supplement ichorCNA

    Python 0 2 0 0 Updated Mar 19, 2025
  • GavinHaLab.github.io Public

    Gavin Ha Lab Website

    JavaScript 1 0 0 3 Updated Mar 3, 2025
  • LNCaP-subline-paper Public

    Code, scripts, data for analyses presented in

    Python 0 0 0 0 Updated Feb 19, 2025
  • WDL-Pipelines Public

    A central repository for tools wrapped in WDL for the Ha lab.

    WDL 0 0 1 0 Updated Feb 1, 2025
  • ichorCNA_WDL Public

    Has Dockerfile and WDL pipeline for ichorCNA

    WDL 1 BSD-3-Clause-Clear 0 0 0 Updated Jan 29, 2025
  • CRPCSubtypingPaper Public

    Analysis code used in ctDNA CRPC phenotype manuscript

    Python 3 1 2 0 Updated Dec 6, 2024
  • ichorCNA Public Forked from broadinstitute/ichorCNA

    Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

    R 15 GPL-3.0 88 12 0 Updated Nov 22, 2024
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