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Merge pull request #202 from GoekeLab/add_ci
add ci
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|---|---|---|
| @@ -0,0 +1,15 @@ | ||
| notes: Pairwise comparison without replicates with default parameter setting. | ||
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| data: | ||
| KO: | ||
| rep1: data/data/HEK293T-METTL3-KO-rep1/dataprep | ||
| WT: | ||
| rep1: data/data/HEK293T-WT-rep1/dataprep | ||
|
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||
| out: ./out | ||
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| method: | ||
| prefiltering: | ||
| method: t-test | ||
| threshold: 0.1 | ||
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xpore/test/data/data/HEK293T-METTL3-KO-rep1/dataprep/data.index
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,3 @@ | ||
| idx,start,end | ||
| ENSG00000114125,0,743597 | ||
| ENSG00000159111,743597,1675247 |
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xpore/test/data/data/HEK293T-METTL3-KO-rep1/dataprep/data.json
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3 changes: 3 additions & 0 deletions
3
xpore/test/data/data/HEK293T-METTL3-KO-rep1/dataprep/data.readcount
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,3 @@ | ||
| idx,n_reads | ||
| ENSG00000114125,178 | ||
| ENSG00000159111,125 |
308 changes: 308 additions & 0 deletions
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xpore/test/data/data/HEK293T-METTL3-KO-rep1/dataprep/eventalign.index
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,308 @@ | ||
| transcript_id,read_index,pos_start,pos_end | ||
| ENST00000351111.6,3,172,290405 | ||
| ENST00000351111.6,0,290405,614006 | ||
| ENST00000351111.6,1,614006,973714 | ||
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This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,4 @@ | ||
| idx,start,end | ||
| ENSG00000114125,0,385701 | ||
| ENSG00000159111,385701,929888 | ||
| ENSG00000095380,929888,952343 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,4 @@ | ||
| idx,n_reads | ||
| ENSG00000114125,91 | ||
| ENSG00000159111,71 | ||
| ENSG00000095380,1 |
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