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Feature/sunmpicomm #370

Merged
merged 196 commits into from
Nov 28, 2023
Merged

Feature/sunmpicomm #370

merged 196 commits into from
Nov 28, 2023

Commits on Oct 26, 2023

  1. remove deprecated arkode code

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  2. remove direct and spils header files

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  3. remove kinsol deprecated code

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  4. more changes for the removal of spils and direct

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  5. remove more deprecated code

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  6. realtype --> sunrealtype

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  7. update sunrealtype related macros

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  8. add old types into a different header for backwards compatibility

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  9. booleantype --> sunbooleantype

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  10. changelog note

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  11. fix redefinition

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  12. regen swig

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  13. update swig

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Commits on Oct 27, 2023

  1. Merge branch 'develop' into feature/remove-deprecated-code

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  2. Apply suggestions from code review 

    Co-authored-by: Daniel R. Reynolds <[email protected]>
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Commits on Nov 2, 2023

  1. Feature: Fortran interface for lapack dense solver (#353) 

    Added Fortran support for the LAPACK dense SUNLinearSolver implementation.

---------

Co-authored-by: Daniel R. Reynolds <[email protected]>
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  2. Feature/new tables (#359) 

     Additional embedded explicit Runge--Kutta
methods to ARKODE.

---------

Co-authored-by: Steven Roberts <[email protected]>
Co-authored-by: David J. Gardner <[email protected]>
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  3. remove implementation of SUNLinsSol and SUNNonlinSol printinfo functions

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  4. replace use of SetDiagnostics in some arkode examples

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  5. make INFO level the default for logging

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  6. change arkode INFO logging to DEBUG

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  7. add debugging filename

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Commits on Nov 3, 2023

  1. clean up use of removed functions

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  2. Merge remote-tracking branch 'origin/develop' into feature/remove-dep… 

    …recated-code
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  3. Merge branch 'feature/remove-deprecated-code' into feature/remove-dep… 

    …recated-code-types
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Commits on Nov 5, 2023

  1. remove deprecated arkode code

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  2. remove direct and spils header files

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  3. remove kinsol deprecated code

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  4. more changes for the removal of spils and direct

    @balos1
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  5. remove more deprecated code

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  6. update swig

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  7. Apply suggestions from code review 

    Co-authored-by: Daniel R. Reynolds <[email protected]>
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  8. Feature: Fortran interface for lapack dense solver (#353) 

    Added Fortran support for the LAPACK dense SUNLinearSolver implementation.

---------

Co-authored-by: Daniel R. Reynolds <[email protected]>
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  9. remove implementation of SUNLinsSol and SUNNonlinSol printinfo functions

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  10. replace use of SetDiagnostics in some arkode examples

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  11. make INFO level the default for logging

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  12. change arkode INFO logging to DEBUG

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  13. add debugging filename

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  14. clean up use of removed functions

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  15. clean removed functions in benchmarks

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  16. remove _spils and _direct references

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  17. remove cpodes script

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  18. cleanup use of removed PREC_ macro

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  19. remove unused flag

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  20. Merge branch 'feature/remove-deprecated-code' into feature/remove-dep… 

    …recated-code-types
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  21. regen fortran

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  22. clean up more use of Diagnostics

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  23. Merge branch 'feature/remove-deprecated-code' into feature/remove-dep… 

    …recated-code-types
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Commits on Nov 6, 2023

  1. remove sundials_lapack.h from install list

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  2. Merge branch 'feature/remove-deprecated-code' into feature/remove-dep… 

    …recated-code-types
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  3. use SUN_RCONST

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  4. remove KINSetInfofile

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  5. Merge branch 'develop' into feature/remove-deprecated-code

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  6. remove warnings to stdout

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Commits on Nov 7, 2023

  1. Merge remote-tracking branch 'origin/develop' into feature/remove-dep… 

    …recated-code
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  2. Merge branch 'feature/remove-deprecated-code' into feature/remove-dep… 

    …recated-code-types
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  3. update action to sunrealtype

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  4. rename sundials_generic to sundials_core

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  5. always link to sundials_core rather than include its objects

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  6. update N_VGetCommunicator to use SUN_Comm

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  7. update GetCommunicator docs

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  8. update swig

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  9. use SUN_Comm in profiler and logger

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  10. rename sundials_fgeneric to sundials_fcore

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  11. fix comm use with logger in fortran

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  12. update signatures in docs and recent changes

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  13. fix typo

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  14. update types section to be in the "Using SUNDIALS" section

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  15. remove DFID

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  16. remove KINInfoHandler

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Commits on Nov 8, 2023

  1. Merge remote-tracking branch 'origin/develop' into feature/remove-dep… 

    …recated-code
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  2. remove unused variable

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Commits on Nov 9, 2023

  1. Merge branch 'develop' into feature/remove-deprecated-code

    @balos1
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  2. remove unused variables

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  3. Update examples/arkode/CXX_xbraid/ark_heat2D_hypre_pfmg_xbraid.cpp 

    Co-authored-by: Daniel R. Reynolds <[email protected]>
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  4. doc fixes

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  5. address more small comments

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Commits on Nov 10, 2023

  1. fix translation of commptr to comm

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  2. SUN_Comm to SUNComm for consistency with other types

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  3. update vectors I missed before

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  4. Fixed broken builds due to incorrect usage of SUNLogger_Create

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  5. change SUNContext_Create to accept SUN_Comm

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  6. find and replace SUNContext_Create with NULL to use SUN_COMM_NULL

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  7. find and replace passing of comm pointer to SUNContext_Create with pa… 

    …ssing of comm by value
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  8. SUN_Comm to SUNComm for consistency with other types

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  9. post merge fix

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  10. change comm NULL check

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  11. Fix fortran interface to MPI_Comm, address calls to MPI functions bef… 

    …ore MPI_Init, and fix docs
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  12. fix C++ interface to SUNContext

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  13. fix a call to SUNProfiler_Create

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  14. fix typo

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  15. remove delted functions from soruce

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  16. remove unused kinsol parts

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  17. remove use of printfl

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  18. change default logging level

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  19. remove more unused stuff in arkode

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  20. fix some C++ calls to SUNContext_Create

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  21. remove uses of ark_mem->report

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  22. build with different logging levels and profiling on/off

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  23. remove broken line

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  24. rename GitHub actions CI jobs

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  25. update log levels cycles through

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  26. dont automatically include sundials_context.hpp

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  27. add recent changes

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  28. fix indentation

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  29. undo removal of include

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  30. dont fail fast

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Commits on Nov 11, 2023

  1. fix logging statements in arkode_adapt broken in merge

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  2. fix compiler warning

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  3. Merge branch 'feature/remove-deprecated-code' into feature/remove-dep… 

    …recated-code-types
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  4. post merge fixes

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  5. post-merge fix: change RCONST to SUN_RCONST

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  6. another spot where we need to supress warning of set but unused

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  7. Merge branch 'feature/remove-deprecated-code' into feature/remove-dep… 

    …recated-code-types
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  8. Merge branch 'feature/remove-deprecated-code-types' into feature/sunm… 

    …picomm
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  9. regen fortran

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  10. Update doc/shared/nvectors/NVector_Description.rst 

    Co-authored-by: Daniel R. Reynolds <[email protected]>
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Commits on Nov 12, 2023

  1. Merge remote-tracking branch 'origin/develop' into feature/remove-dep… 

    …recated-code
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  2. Merge branch 'feature/remove-deprecated-code' into feature/remove-dep… 

    …recated-code-types
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  3. Merge branch 'feature/remove-deprecated-code-types' into feature/sunm… 

    …picomm
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  4. fix some more SUNContext_Create calls

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  5. remove left over debugging print statements

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Commits on Nov 13, 2023

  1. use SUN_COMM_NULL

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  2. doc grammar

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  3. doc fix

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  4. need to use types mode for SUN_COMM_NULL

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  5. fix MPI linking for sunadaptcontroller

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  6. Merge remote-tracking branch 'origin/develop' into feature/remove-dep… 

    …recated-code-types
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  7. Merge branch 'feature/remove-deprecated-code-types' into feature/sunm… 

    …picomm
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  8. a bad solution to SUN_COMM_NULL fortran mapping

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Commits on Nov 14, 2023

  1. remove unused variable

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  2. possible workaround for MPI in installed examples

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  3. fix references to sundials_core_obj

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  4. add details about linking libsundials_core in docs

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  5. link to core in templates

    @balos1
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  6. fix doc build

    @gardner48
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  7. Update CHANGELOG.md 

    Co-authored-by: David Gardner <[email protected]>
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  8. rename sundials_types_old

    @balos1
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  9. update recent changes

    @balos1
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  10. fix tables

    @gardner48
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  11. fix typo

    @gardner48
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  12. install sundials_types_deprecated.h

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  13. Apply suggestions for READMEs 

    Co-authored-by: Daniel R. Reynolds <[email protected]>
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  14. Apply suggestions from code review 

    Co-authored-by: Daniel R. Reynolds <[email protected]>
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  15. Update doc/shared/sunmatrix/SUNMatrix_SLUNRloc.rst 

    Co-authored-by: Daniel R. Reynolds <[email protected]>
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  16. Update doc/shared/nvectors/NVector_SYCL.rst 

    Co-authored-by: Daniel R. Reynolds <[email protected]>
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  17. Merge remote-tracking branch 'origin/feature/remove-deprecated-code-t… 

    …ypes' into feature/sunmpicomm
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  18. add mpi to SUNDIALSConfig

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  19. Merge remote-tracking branch 'origin/develop' into feature/sunmpicomm

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  20. add core lib to xbraid cmake template

    @balos1
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  21. fix install doc includes

    @gardner48
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  22. fix install guide build

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  23. fix IDAS doc build

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  24. fix Ginkgo matrix include in KINSOL docs

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Commits on Nov 15, 2023

  1. replace NULL with SUN_COMM_NULL

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  2. link cvode fused ops to core

    @balos1
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  3. link sunmemory to core

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  4. use MPI_Comm where we can

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  5. add sundials_core to makefile templates

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Commits on Nov 16, 2023

  1. Merge branch 'develop' into feature/sunmpicomm

    @gardner48
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Commits on Nov 20, 2023

  1. fix cmake templates

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  2. Merge remote-tracking branch 'origin/develop' into feature/sunmpicomm

    @balos1
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  3. move core lib to later in link list

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Commits on Nov 21, 2023

  1. add mpi paths to config

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  2. try MPIEXEC_EXECUTABLE

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  3. need core lib in second loop

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  4. link header defined libraries to core

    @balos1
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  5. remove unused variable

    @balos1
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  6. update docs with info on sundials_core

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Commits on Nov 23, 2023

  1. Update doc/shared/sundials/Install.rst

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Commits on Nov 27, 2023

  1. update changelog according to PR comments

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  2. use MPI_C_COMPILER instead of MPIEXEC_EXECUTABLE for finding MPI in S… 

    …UNDIALSConfig
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  3. cmake fixes as per commentd

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  4. more doc fixes based on comments

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  5. move cmake code for setting _EXAMPLES_lang_COMPILER variables to exam… 

    …ples CMakeLists.txt
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  6. quote MPI variables in example templates

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  7. dont link to sundials_core in kokkos example

    @balos1
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  8. fix formatting in f90 examples

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  9. add quotes to @_EXAMPLES_CXX_COMPILER@

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  10. move sundials_core in makefile templates

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  11. formatting

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  12. make sundials_fcore_mod library and use it instead of object lib

    @balos1
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  13. Fix c2f fortran case

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  14. fixes in logger and profiler related to freeing comm

    @balos1
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  15. remove duplicate swig code

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  16. recent change fixes

    @balos1
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  17. insert copyright into sundials_types_mod

    @balos1
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  18. make suggested change in manyvector

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  19. use cmake 3.18.6 for testing

    @gardner48
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  20. fix f2003 example templates

    @balos1
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  21. fix typo

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Commits on Nov 28, 2023

  1. Update CHANGELOG.md 

    Co-authored-by: David Gardner <[email protected]>
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  2. return success instead of an error when pointer is null in destroy fu… 

    …nctions
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  3. update docs as requested

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  4. more doc fixes

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  5. Merge remote-tracking branch 'origin/feature/sunmpicomm' into feature… 

    …/sunmpicomm
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