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@MDU-PHL

Microbiological Diagnostic Unit Public Health Laboratory

Australian national reference laboratory for Salmonella, Listeria and EHEC.

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  1. abritamr abritamr Public

    A pipeline for running AMRfinderPlus and collating results into functional classes

    Python 75 15

  2. bohra bohra Public

    A pipeline for bioinformatics analysis of bacterial genomes

    Nextflow 20 4

  3. meningotype meningotype Public

    In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis

    Python 12 7

  4. pango-collapse pango-collapse Public

    app to collapse Pango lineages for reporting

    Python 11 1

  5. emmtyper emmtyper Public

    Forked from Andre-Tan/EmMAIL

    emm Automatic Isolate Labeller

    Jupyter Notebook 9 3

  6. LisSero LisSero Public

    In silico serotype prediction for Listeria monocytogenes

    Python 7 9

Repositories

Showing 10 of 51 repositories
  • pango-watch Public
    MDU-PHL/pango-watch’s past year of commit activity
    HTML 1 3 2 0 Updated Apr 7, 2025
  • bohra Public

    A pipeline for bioinformatics analysis of bacterial genomes

    MDU-PHL/bohra’s past year of commit activity
    Nextflow 20 GPL-3.0 4 23 (2 issues need help) 0 Updated Apr 3, 2025
  • github-watch Public
    MDU-PHL/github-watch’s past year of commit activity
    Python 0 1 2 0 Updated Apr 3, 2025
  • salmonella_typing Public

    Salmonella serotyping at MDU

    MDU-PHL/salmonella_typing’s past year of commit activity
    Python 1 0 14 1 Updated Apr 1, 2025
  • ngmaster Public

    In silico multi-antigen sequence typing for Neisseria gonorrhoeae (NG-MAST)

    MDU-PHL/ngmaster’s past year of commit activity
    Python 6 GPL-3.0 5 10 2 Updated Apr 1, 2025
  • himal_scripts Public

    Some scripts for MDU data

    MDU-PHL/himal_scripts’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 27, 2025
  • emmtyper Public Forked from Andre-Tan/EmMAIL

    emm Automatic Isolate Labeller

    MDU-PHL/emmtyper’s past year of commit activity
    Jupyter Notebook 9 GPL-3.0 4 15 0 Updated Mar 25, 2025
  • tbtamr Public

    AMR inference for Mtb - cousin to abriTAMR

    MDU-PHL/tbtamr’s past year of commit activity
    Python 4 GPL-3.0 4 2 1 Updated Feb 20, 2025
  • meningotype Public

    In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis

    MDU-PHL/meningotype’s past year of commit activity
    Python 12 GPL-3.0 7 12 1 Updated Feb 2, 2025
  • hicap Public Forked from scwatts/hicap

    👋🎓 in silico typing of the H. influenzae cap locus

    MDU-PHL/hicap’s past year of commit activity
    Python 0 GPL-3.0 4 0 0 Updated Feb 1, 2025

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