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@github-actions github-actions released this 30 Jan 14:06
v1.0.0
1a65950
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Learn about vigilant mode.

1.0.0 (2025-01-30)

Features

  • added authors, description, and reference section. closes #2 (c23716b)
  • added example test files (722c721)
  • added github actions (83dcc44)
  • added log file export for all modules, closes #1 (94c1a5a)
  • added module for R MSstats package (3a99ae1)
  • added module to automatically retrieve proteome fasta file (aa00ca9)
  • added module to clean up temp files after pipeline execution; fixes #1 (785f877)
  • added module to generate HTML report from R markdown template (d239316)
  • added module to sent email reports; closes #8 (04037a6)
  • added more options to decoypyrat (89db96c)
  • added new module to check sample sheet (b48cac4)
  • added possibility to submit contrasts with samplesheet, fixes #3 (2f952e6)
  • added protein summary tables to email report (d9c2512)
  • added rule to gather module and env log files; env info added to report (f9b5897)
  • added schmematic overview of pipeline; closes #2 (df4aec0)
  • added support for PDF export, closes #7 (ef5f75e)
  • added support to select workflow from sample type (11dd081)
  • added yml config for sm workflow catalog (7cce96d)
  • change license to MIT (d80702c)
  • finished building basic HTML report with many different QC figures (b9bd8c7)
  • improved report, QC figures and documentation (35c901a)
  • major change in organisation, adding conda env definitions (6def601)
  • major update to repo structure and dependencies (df35acc)
  • streamlined snakefile regarding in/output paths, fixes #6 (c83e9f8)
  • update catalog yml and snakemake options (9198719)

Bug Fixes

Assets 2
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