Skip to content
This repository has been archived by the owner on May 3, 2024. It is now read-only.

Issues: Magdoll/cDNA_Cupcake

45 Open 168 Closed
45 Open 168 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

collapse_isoforms_by_sam.py out of memory
#250 opened Apr 29, 2024 by SY348
cdna_cupcake与SQANTI3
#249 opened Mar 20, 2024 by tky199996
Demultiplex after clustering / genome alignment
#248 opened Mar 7, 2024 by davidvilanova
fusion_finder.py
#247 opened Mar 3, 2024 by tky199996
1
Saturation analysis bug fixes; compatibility with newer isoseq cluster [make_file_for_subsampling_from_collapsed.py]
#244 opened Oct 12, 2023 by mrendleman
solved
#242 opened Sep 22, 2023 by gengbaobao
Cython compiler error when installing/building cDNA_cupcake
#241 opened Sep 14, 2023 by skchronicles
2
TypeError: iter_gmap_sam() got an unexpected keyword argument 'type' using collapse_isoforms_by_sam.py
#236 opened Jan 17, 2023 by gyorkeia
fusion_collate_info.py script has bugs and its not working.
#235 opened Nov 15, 2022 by unique379r
lima for skera.bam
#234 opened Nov 8, 2022 by hmyh1202
Create sam format for collapse_isoforms_by_sam.py
#232 opened Oct 3, 2022 by rodrisenovilla
cupcake2 directory missing, compilation fails
#231 opened Sep 1, 2022 by dvargaslandin
4
chain_samples.py does not work!
#230 opened Jul 19, 2022 by unique379r
Question: where does the count.txt file come from?
#228 opened May 29, 2022 by mad-scientist-in-training
Struggling in identifying the true positive fusion transcripts outputting from fusion_finder.py
#227 opened May 24, 2022 by wzhang42
How to configure the correct /optimal parameter and validate the true positive from PB fusion candidate list.
#226 opened May 21, 2022 by wzhang42
demux_isoseq_with_genome.py Issue - expecting input not generated by get_abundance_post_collapse.py
#223 opened May 19, 2022 by KrRi4
pkg_resources.ResolutionError when running "collapse_isoforms_by_sam.py"
#220 opened May 10, 2022 by ssaif-cellarity
2
Error about demux_isoseq_with_genome.py
#219 opened May 7, 2022 by Yuzhang0102
collapse with some data was very slow
#209 opened Apr 29, 2022 by shizhuoxing
1
collapse_isoforms_by_sam.py - can not iterate over samfile without header
#199 opened Mar 4, 2022 by ckitsoulis
2
Calling variants using IsoPhase from Iso-Seq data
#198 opened Feb 28, 2022 by Yexin-Zhang
1
Don't merge sample by chain_samples.py
#195 opened Feb 13, 2022 by 2209983424
Is there a hard limit on inter-exonic ranges?
#194 opened Feb 10, 2022 by markb729
1
chain_samples.py Exception: Sanity check failed!
#192 opened Feb 7, 2022 by tabeariepe
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.